Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0159
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    27   2.0  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    25   8.2  

>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +3

Query: 93  KEKFYMEFVDCMLTQR 140
           +EK+Y++ VDC+ TQ+
Sbjct: 367 REKYYLQIVDCLCTQK 382


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = +1

Query: 103 SIWSSLTACLLNELLTKIHISHRNTCLLNQQLNVSSR*NPVKSNICVANYLFGSLDN*QF 282
           S+W+     LLN++  KI ++ +   L N+   V S+         + N+    L+N  +
Sbjct: 64  SVWNYRREILLNDVFPKISLNEKQDLLDNELKYVLSKMKVFPKVYWIFNHRRWCLENAPY 123

Query: 283 SKCNF---LTVSNYSSDA 327
              N+   +T    S+DA
Sbjct: 124 PNWNYEMMITEKLLSADA 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,406
Number of Sequences: 5004
Number of extensions: 59476
Number of successful extensions: 138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)