Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0159
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)                     28   6.6  
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_33279| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)
          Length = 778

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 661 VETNFIGHHRKLRFKFCRHHKWN 593
           VE NF+GH R+ R   CR  K N
Sbjct: 233 VERNFVGHRRRCRRVVCRATKSN 255


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -2

Query: 131  KHAVNELHIEFFFLMCVPRIHPTQEQVNTPRPQ----ISLKNIL 12
            +H +NELH     +  +PRI  ++ QV   R +    IS +N+L
Sbjct: 911  EHLINELHAWVGIITTLPRIQSSRYQVGLERDESESDISYRNLL 954


>SB_33279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 551 QVWNVPSKYRHEVPIPFVMPTKLKTKF 631
           Q W  P + RH   +PF++P   K KF
Sbjct: 85  QAWRDP-RLRHSAKMPFILPGSQKEKF 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,623,674
Number of Sequences: 59808
Number of extensions: 394674
Number of successful extensions: 807
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)