Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0159
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42360.1 68418.m05158 kelch repeat-containing F-box family pr...    29   3.1  
At5g42350.1 68418.m05157 kelch repeat-containing F-box family pr...    29   3.1  
At3g27870.1 68416.m03475 haloacid dehalogenase-like hydrolase fa...    27   9.5  

>At5g42360.1 68418.m05158 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 563

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 509 FFSQNKVTILLASFQVWNVPSKYRHEVPIPFVMPTKLKTKFSVMTNK 649
           F S   + +   S + W   +  RH   +P V  T++ ++FS M  K
Sbjct: 246 FKSHRGILVFSPSIKAWRKIASMRHARSLPIVGATEVTSEFSTMQTK 292


>At5g42350.1 68418.m05157 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 563

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 509 FFSQNKVTILLASFQVWNVPSKYRHEVPIPFVMPTKLKTKFSVMTNK 649
           F S   + +   S + W   +  RH   +P V  T++ ++FS M  K
Sbjct: 246 FKSHRGILVFSPSIKAWRKIASMRHARSLPIVGATEVTSEFSTMQTK 292


>At3g27870.1 68416.m03475 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
           musculus} SP|P98200, Homo sapiens SP|O43520,
           {Arabidopsis thaliana} SP|P98204; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1174

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 406 EYCIKITQDLIACRSPCRILYSLILSLLFDGNQ 504
           E  IK  + +I C  P   LYS + +L F+G Q
Sbjct: 212 EESIKNFRGMIKCEDPNEHLYSFVGTLYFEGKQ 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,810,945
Number of Sequences: 28952
Number of extensions: 278853
Number of successful extensions: 556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)