Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0156
         (834 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   151   5e-37
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              84   1e-16
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 54   1e-07
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)                      31   0.87 
SB_2156| Best HMM Match : DUF1378 (HMM E-Value=6.3)                    31   1.5  
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_6884| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.5  
SB_35499| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.2)            29   4.6  
SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)                   29   4.6  
SB_19676| Best HMM Match : Ctr (HMM E-Value=3.1)                       29   6.1  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  151 bits (367), Expect = 5e-37
 Identities = 67/82 (81%), Positives = 77/82 (93%)
 Frame = +3

Query: 264 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNK 443
           EESGEHIVAGAGELHLEICLKDLEEDHACIP+KKS+PVVSYRE V+++S+Q+CLSKSPNK
Sbjct: 513 EESGEHIVAGAGELHLEICLKDLEEDHACIPLKKSEPVVSYRECVSDKSNQMCLSKSPNK 572

Query: 444 HNRLFMKAQPMPDGLPEDIDEG 509
           HNRLFM A P+ + LPEDID+G
Sbjct: 573 HNRLFMTAGPLEEKLPEDIDDG 594



 Score =  147 bits (356), Expect = 1e-35
 Identities = 69/81 (85%), Positives = 75/81 (92%)
 Frame = +1

Query: 10  MGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKN 189
           MGRY+E I DVP GNI GLVGVDQFLVKTGTI+T+++ HNMK+MKFSVSPVVRVAVEPKN
Sbjct: 428 MGRYIEPIVDVPCGNIVGLVGVDQFLVKTGTISTYEHCHNMKMMKFSVSPVVRVAVEPKN 487

Query: 190 PADLPKLVEGLKRLAKSDPMV 252
           PADLPKLVEGL RLAKSDPMV
Sbjct: 488 PADLPKLVEGLNRLAKSDPMV 508



 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 40/52 (76%), Positives = 45/52 (86%)
 Frame = +1

Query: 607 PRGYRPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIY 762
           P G  PN+LVD SKGVQYLNEIKDSVVAGFQWA KEG + +EN+RGVRFNI+
Sbjct: 629 PEGTGPNLLVDVSKGVQYLNEIKDSVVAGFQWATKEGPLCDENVRGVRFNIH 680



 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 47/112 (41%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
 Frame = +2

Query: 512 VNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTAPTSWWIAPK--EFSTSMK---LR 676
           +NPR DFK RARYL + Y +DV EARKIW FGPEGT P       K  ++   +K   + 
Sbjct: 597 INPRQDFKIRARYLADTYGWDVNEARKIWSFGPEGTGPNLLVDVSKGVQYLNEIKDSVVA 656

Query: 677 TLLWLDSSGPLRKELWLKRICVVLDSTSICNTPY*CHP*SGGQIIPTTRRCL 832
              W    GPL  E        + D T   +     H   GGQIIPT RR L
Sbjct: 657 GFQWATKEGPLCDENVRGVRFNIHDVTLHADA---IHR-GGGQIIPTARRVL 704


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 37/80 (46%), Positives = 56/80 (70%)
 Frame = +3

Query: 264 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNK 443
           EESGEH++ G GEL+L+  + DL   ++ I IK +DPV+++ ETV E S   C +++PNK
Sbjct: 490 EESGEHVILGTGELYLDCIMHDLRRMYSEIDIKVADPVIAFCETVVETSSLKCFAETPNK 549

Query: 444 HNRLFMKAQPMPDGLPEDID 503
            N++ M A+P+  GL EDI+
Sbjct: 550 KNKVTMIAEPLEKGLAEDIE 569



 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 33/82 (40%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
 Frame = +1

Query: 16  RYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKN---AHNMKVMKFSVSPVVRVAVEPK 186
           RY   +  VP+GN   + GVDQ +VKT TIT  +    A+  + +KF+    +++AVEP 
Sbjct: 404 RYNIEVNRVPAGNWVLIEGVDQPIVKTATITEVQGSEEAYIFRPLKFNTCSTIKIAVEPH 463

Query: 187 NPADLPKLVEGLKRLAKSDPMV 252
           NP++LPK+++GL+++ KS P++
Sbjct: 464 NPSELPKMLDGLRKVNKSYPLL 485



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
 Frame = +1

Query: 607 PRGYRPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNI 759
           P    PNILVD +   +     LN +KDS++ GFQWA +EG + +E +R V+F I
Sbjct: 605 PENTGPNILVDDTLPSEVDKSLLNTVKDSIIQGFQWATREGPLCDEPIRNVKFKI 659



 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 36/107 (33%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
 Frame = +2

Query: 533 KTRARYLTEKYEYDVTEARKIWCFGPEGTAPTSWW--IAPKEFSTSMK-------LRTLL 685
           K    +   KY++D+  AR IW FGPE T P        P E   S+        ++   
Sbjct: 580 KKLGEFFQTKYDWDLLAARSIWAFGPENTGPNILVDDTLPSEVDKSLLNTVKDSIIQGFQ 639

Query: 686 WLDSSGPLRKELWLKRICVVLDSTSICNTPY*CHP*SGGQIIPTTRR 826
           W    GPL  E        +LD+  I   P   H   GGQIIPT RR
Sbjct: 640 WATREGPLCDEPIRNVKFKILDAV-IAGEP--IHR-GGGQIIPTARR 682


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 19/41 (46%), Positives = 31/41 (75%)
 Frame = +3

Query: 276 EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 398
           EH++  AGE+HL+ C+ DL+  +AC+ +  SDP++ +RETV
Sbjct: 2   EHVIIAAGEVHLQRCVDDLKRRYACVELNVSDPIIPFRETV 42


>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1691

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 194 AGFLGSTATRTTGDTLNFITFMLWAFLKVVMVP-VLTKN*STPTRPQMLPE 45
           AG+  S+A+ TT   +N++TF      K V VP  L+ + S+P  P +L E
Sbjct: 621 AGYSTSSASSTTPKAVNYVTFKENHVSKEVSVPSPLSSDASSPASPSILGE 671


>SB_2156| Best HMM Match : DUF1378 (HMM E-Value=6.3)
          Length = 210

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -1

Query: 162 DW*YTEFHHLHVVGILESGDGTSLD*ELIDSNKTTDVTRGHILNSFNITS 13
           DW  T  HH    G  ++ DG   D E+ DSNK   VT    L++ NI S
Sbjct: 152 DWALTNPHHDGPDG--KTSDGNKTDSEIQDSNKKESVTDKISLDACNIMS 199


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 357 IKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGL 488
           I+K+     Y+E + +E++ L   +  N+H+ +   AQ  P GL
Sbjct: 216 IEKAQKAFEYKENIEKEAEALRKQQLENRHSLISSNAQYHPQGL 259


>SB_6884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 638 IAPKEFSTSMKLRTLLWLDSSGPLRKELWLKRICVVLDSTSICNT 772
           +A  +FS  +  + LL   ++  LR   WLK  C +  + SIC T
Sbjct: 67  LALSDFSVGILAQPLLVAWAAIELRASEWLKMYCDIATANSICTT 111


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 242  SDLARRLRPSTSLGRSAGFLGSTATRTTGDTLNFITFMLWAFLKV 108
            S+  RR +P T  GR+  FLG+ + R T    NF+ F+   F+++
Sbjct: 1690 SNDGRRFKPYTQFGRTKVFLGN-SDRNTVVGHNFLPFIKARFIRI 1733


>SB_35499| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.2)
          Length = 263

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 651 SFGAIHQDVGAVPSGPKHQILRA--SVTSYSYFSVRYRARVLKSSRGFTRPHQCPLADHQ 478
           S  A    +G+  +G K  + +A  SV+S  + S   +   L  SR F RP   P + HQ
Sbjct: 27  SVNASATSLGSEGTGSKENVKKALASVSSQDFSSKDAKKGDLSISRVFPRPASSPASGHQ 86

Query: 477 AWAEPS 460
             A  S
Sbjct: 87  RSASES 92


>SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 675 LNFIEVLNSFGAIHQDVGAVPSGPKHQILRASV 577
           LN +E  N FG + Q+ G   +  KH+ L+  V
Sbjct: 329 LNMLEARNDFGVVEQNDGCQQNRSKHEFLQVYV 361


>SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)
          Length = 1562

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 714 RSYG*REFAW-C*IQHLYVTLHTDAIHRVVAKSFQQL 821
           RS+  R FAW C  QH YVT + D     V K++++L
Sbjct: 743 RSFALR-FAWPCYAQHAYVTTYNDTNRYDVFKTYEEL 778


>SB_19676| Best HMM Match : Ctr (HMM E-Value=3.1)
          Length = 311

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -1

Query: 153 YTEFHHLHVVGILESGDGTSLD*ELIDSNKTTDVTRGHILNSFNITSHLV 4
           + E HHLH      S + +     L+  N T  + R H+  S   T+ LV
Sbjct: 93  FWESHHLHFTAPSNSSEDSYYHGNLMLRNHTNRILRDHVFTSAACTTKLV 142


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = -2

Query: 254  CTMGSDLARRLRPSTSLGRSAGFLGSTATRTTGD 153
            C MG D   RLR ST L R   F+GS     T D
Sbjct: 1064 CNMGFDAVMRLRTSTGL-RPVDFVGSFYMSNTTD 1096


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,409,974
Number of Sequences: 59808
Number of extensions: 647785
Number of successful extensions: 1621
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)