Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0156
(834 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 122 3e-28
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 92 5e-19
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 91 1e-18
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 91 1e-18
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 72 5e-13
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 48 1e-05
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 43 2e-04
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 43 2e-04
At1g10155.1 68414.m01145 hypothetical protein 32 0.54
At2g47500.1 68415.m05929 kinesin motor protein-related 30 1.6
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam... 30 2.2
At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ... 30 2.2
At1g70160.1 68414.m08073 expressed protein similar to hypothetic... 29 3.8
At5g15580.1 68418.m01824 expressed protein unknown protein F14P3... 29 5.0
At1g70890.1 68414.m08179 major latex protein-related / MLP-relat... 29 5.0
At5g17300.1 68418.m02026 myb family transcription factor similar... 28 6.6
At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger) fa... 28 6.6
At1g31200.1 68414.m03819 expressed protein 28 6.6
At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger) fa... 28 8.8
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si... 28 8.8
At1g26760.1 68414.m03258 SET domain-containing protein contains ... 28 8.8
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 122 bits (294), Expect = 3e-28
Identities = 59/90 (65%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Frame = +3
Query: 243 PHGACINEESGEHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVSYRETVAEESDQL 419
P C EESGEHIVAGAGELHLEICLKDL++D I KSDPVVS+RETV + S +
Sbjct: 516 PMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVCDRSTRT 575
Query: 420 CLSKSPNKHNRLFMKAQPMPDGLPEDIDEG 509
+SKSPNKHNRL+M+A+PM +GL E ID+G
Sbjct: 576 VMSKSPNKHNRLYMEARPMEEGLAEAIDDG 605
Score = 107 bits (256), Expect = 1e-23
Identities = 54/88 (61%), Positives = 66/88 (75%), Gaps = 2/88 (2%)
Frame = +1
Query: 10 MGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFK--NAHNMKVMKFSVSPVVRVAVEP 183
MG+ E +EDVP GN +VG+DQF+ K T+T K +AH ++ MKFSVSPVVRVAV+
Sbjct: 436 MGKRQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQC 495
Query: 184 KNPADLPKLVEGLKRLAKSDPMVHVLMK 267
K +DLPKLVEGLKRLAKSDPMV M+
Sbjct: 496 KVASDLPKLVEGLKRLAKSDPMVVCTME 523
Score = 79.8 bits (188), Expect = 2e-15
Identities = 35/51 (68%), Positives = 42/51 (82%)
Frame = +1
Query: 607 PRGYRPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNI 759
P PN++VD KGVQYLNEIKDSVVAGFQWA+KEG +AEEN+RG+ F +
Sbjct: 639 PETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGPLAEENMRGICFEV 689
Score = 59.7 bits (138), Expect = 2e-09
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Frame = +2
Query: 506 GRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTAPTSWWIAPK--EFSTSMK--- 670
GR+ PRDD K R++ L E++ +D A+KIW FGPE T P K ++ +K
Sbjct: 605 GRIGPRDDPKIRSKILAEEFGWDKDLAKKIWAFGPETTGPNMVVDMCKGVQYLNEIKDSV 664
Query: 671 LRTLLWLDSSGPLRKELWLKRIC-----VVLDSTSICNTPY*CHP*SGGQIIPTTRRCL 832
+ W GPL +E ++ IC VVL S +I GGQ+IPT RR +
Sbjct: 665 VAGFQWASKEGPLAEEN-MRGICFEVCDVVLHSDAIHR--------GGGQVIPTARRVI 714
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 91.9 bits (218), Expect = 5e-19
Identities = 44/95 (46%), Positives = 64/95 (67%)
Frame = +3
Query: 264 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNK 443
EESGEH + G GEL+L+ +KDL E ++ + +K +DPVVS+ ETV E S C +++PNK
Sbjct: 622 EESGEHTILGTGELYLDSIIKDLRELYSEVQVKVADPVVSFCETVVESSSMKCFAETPNK 681
Query: 444 HNRLFMKAQPMPDGLPEDIDEGA*IPAMTSRLALG 548
N+L M A+P+ GL EDI+ G + +R+ LG
Sbjct: 682 KNKLTMIAEPLDRGLAEDIENGV-VSIDWNRVQLG 715
Score = 64.1 bits (149), Expect = 1e-10
Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Frame = +1
Query: 16 RYVEAIEDVPSGNICGLVGVDQFLVKTGTITTF---KNAHNMKVMKFSVSPVVRVAVEPK 186
RY + P G+ + GVD ++KT T+ ++ + + +KF+ PVV+ A EP
Sbjct: 536 RYRIPVSSAPPGSWVLIEGVDASIMKTATLCNASYDEDVYIFRALKFNTLPVVKTATEPL 595
Query: 187 NPADLPKLVEGLKRLAKSDPM 249
NP++LPK+VEGL++++KS P+
Sbjct: 596 NPSELPKMVEGLRKISKSYPL 616
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +1
Query: 670 IKDSVVAGFQWAAKEGVMAEENLRGVRFNI 759
+KDS+V GFQW A+EG + +E +R V+F I
Sbjct: 762 VKDSIVQGFQWGAREGPLCDEPIRNVKFKI 791
Score = 31.5 bits (68), Expect = 0.71
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Frame = +2
Query: 548 YLTEKYEYDVTEARKIWCFGP--EGTAPTSWWIAPKEFSTSMKL-------RTLLWLDSS 700
+ KY++D+ AR IW FGP +GT P E ++ + + W
Sbjct: 717 FFRTKYDWDLLAARSIWAFGPDKQGTNILLDDTLPTEVDRNLMMGVKDSIVQGFQWGARE 776
Query: 701 GPLRKELWLKRICVVLDSTSICNTPY*CHP*SGGQIIPTTRR 826
GPL E ++ + + I P H GQ+IPT RR
Sbjct: 777 GPLCDEP-IRNVKFKIVDARIAPEP--LHR-GSGQMIPTARR 814
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 90.6 bits (215), Expect = 1e-18
Identities = 40/82 (48%), Positives = 58/82 (70%)
Frame = +3
Query: 264 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNK 443
EESGEH + G GEL+L+ +KDL E ++ + +K +DPVVS+ ETV E S C +++PNK
Sbjct: 636 EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNK 695
Query: 444 HNRLFMKAQPMPDGLPEDIDEG 509
N++ M A+P+ GL EDI+ G
Sbjct: 696 KNKITMIAEPLDRGLAEDIENG 717
Score = 62.5 bits (145), Expect = 3e-10
Identities = 29/81 (35%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Frame = +1
Query: 16 RYVEAIEDVPSGNICGLVGVDQFLVKTGTITTF---KNAHNMKVMKFSVSPVVRVAVEPK 186
RY + P G+ + GVD ++KT T+ ++ + + ++F+ PVV+ A EP
Sbjct: 550 RYRIPVSSAPPGSWVLIEGVDASIMKTATLCNASYDEDVYIFRALQFNTLPVVKTATEPL 609
Query: 187 NPADLPKLVEGLKRLAKSDPM 249
NP++LPK+VEGL++++KS P+
Sbjct: 610 NPSELPKMVEGLRKISKSYPL 630
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Frame = +1
Query: 622 PNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNI 759
PNIL+D + + + +KDS+V GFQW A+EG + +E +R V+F I
Sbjct: 756 PNILLDDTLPTEVDRNLMMAVKDSIVQGFQWGAREGPLCDEPIRNVKFKI 805
Score = 32.7 bits (71), Expect = 0.31
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 548 YLTEKYEYDVTEARKIWCFGPEGTAP 625
+ KY++D+ AR IW FGP+ P
Sbjct: 731 FFRTKYDWDLLAARSIWAFGPDKQGP 756
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 90.6 bits (215), Expect = 1e-18
Identities = 40/82 (48%), Positives = 58/82 (70%)
Frame = +3
Query: 264 EESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNK 443
EESGEH + G GEL+L+ +KDL E ++ + +K +DPVVS+ ETV E S C +++PNK
Sbjct: 636 EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNK 695
Query: 444 HNRLFMKAQPMPDGLPEDIDEG 509
N++ M A+P+ GL EDI+ G
Sbjct: 696 KNKITMIAEPLDRGLAEDIENG 717
Score = 62.5 bits (145), Expect = 3e-10
Identities = 29/81 (35%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Frame = +1
Query: 16 RYVEAIEDVPSGNICGLVGVDQFLVKTGTITTF---KNAHNMKVMKFSVSPVVRVAVEPK 186
RY + P G+ + GVD ++KT T+ ++ + + ++F+ PVV+ A EP
Sbjct: 550 RYRIPVSSAPPGSWVLIEGVDASIMKTATLCNASYDEDVYIFRALQFNTLPVVKTATEPL 609
Query: 187 NPADLPKLVEGLKRLAKSDPM 249
NP++LPK+VEGL++++KS P+
Sbjct: 610 NPSELPKMVEGLRKISKSYPL 630
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Frame = +1
Query: 622 PNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNI 759
PNIL+D + + + +KDS+V GFQW A+EG + +E +R V+F I
Sbjct: 756 PNILLDDTLPTEVDRNLMMAVKDSIVQGFQWGAREGPLCDEPIRNVKFKI 805
Score = 32.7 bits (71), Expect = 0.31
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 548 YLTEKYEYDVTEARKIWCFGPEGTAP 625
+ KY++D+ AR IW FGP+ P
Sbjct: 731 FFRTKYDWDLLAARSIWAFGPDKQGP 756
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 71.7 bits (168), Expect = 5e-13
Identities = 29/83 (34%), Positives = 56/83 (67%)
Frame = +1
Query: 10 MGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKN 189
MG+ + + +V +GN+ + G+ ++ K+ T+++ +N + M+F VSP +RVA+EP +
Sbjct: 488 MGQGLTPVTEVKAGNVVAIRGLGPYISKSATLSSTRNCWPLASMEFQVSPTLRVAIEPSD 547
Query: 190 PADLPKLVEGLKRLAKSDPMVHV 258
PAD+ L++GL+ L ++DP V +
Sbjct: 548 PADMSALMKGLRLLNRADPFVEI 570
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/49 (51%), Positives = 36/49 (73%)
Frame = +3
Query: 273 GEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQL 419
GEH++A AGE+HLE C+KDL+E A + ++ S P+VSYRET+ + L
Sbjct: 576 GEHVLAAAGEVHLERCVKDLKERFAKVNLEVSPPLVSYRETIEGDGSNL 624
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 47.6 bits (108), Expect = 1e-05
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +1
Query: 25 EAIEDVPSGNICGLVGVDQFLVKTG-TITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADL 201
E ++ +G+I L G+ + TG T++ +N ++ M F PV++VA+EPK AD+
Sbjct: 451 EDVKVALTGDIIALAGLKDTI--TGETLSDPENPVVLERMDFP-DPVIKVAIEPKTKADI 507
Query: 202 PKLVEGLKRLAKSDPMVHVLMKNQEN 279
K+ GL +LA+ DP H + N
Sbjct: 508 DKMATGLIKLAQEDPSFHFSRDEEMN 533
Score = 35.1 bits (77), Expect = 0.058
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +3
Query: 261 NEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAE 404
+EE + ++ G GELHLEI + L+ + + P V+YRE++++
Sbjct: 529 DEEMNQTVIEGMGELHLEIIVDRLKREFK-VEANVGAPQVNYRESISK 575
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +3
Query: 258 INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAE--ESDQLCLSK 431
++ ESG+ I++G GELHL+I ++ + ++ + P V++RET+ + E D L +
Sbjct: 496 LDPESGQTIISGMGELHLDIYVERMRREYK-VDATVGKPRVNFRETITQRAEFDYLHKKQ 554
Query: 432 S--PNKHNRLFMKAQPMPDGLPEDID 503
S ++ R+ +P+P G E +
Sbjct: 555 SGGAGQYGRVTGYVEPLPPGSKEKFE 580
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = +1
Query: 22 VEAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADL 201
+E I++ +G I + G++ T T + M M PV+ +AV+P +
Sbjct: 419 MEDIQEAHAGQIVAVFGIE--CASGDTFTDGSVKYTMTSMNVP-EPVMSLAVQPVSKDSG 475
Query: 202 PKLVEGLKRLAKSDPMVHV 258
+ + L R K DP V
Sbjct: 476 GQFSKALNRFQKEDPTFRV 494
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +3
Query: 258 INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAE--ESDQLCLSK 431
++ ESG+ I++G GELHL+I ++ + ++ + P V++RET+ + E D L +
Sbjct: 496 LDPESGQTIISGMGELHLDIYVERMRREYK-VDATVGKPRVNFRETITQRAEFDYLHKKQ 554
Query: 432 S--PNKHNRLFMKAQPMPDGLPEDID 503
S ++ R+ +P+P G E +
Sbjct: 555 SGGAGQYGRVTGYVEPLPPGSKEKFE 580
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = +1
Query: 22 VEAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADL 201
+E I++ +G I + G++ T T + M M PV+ +AV+P +
Sbjct: 419 MEDIQEAHAGQIVAVFGIE--CASGDTFTDGSVKYTMTSMNVP-EPVMSLAVQPVSKDSG 475
Query: 202 PKLVEGLKRLAKSDPMVHV 258
+ + L R K DP V
Sbjct: 476 GQFSKALNRFQKEDPTFRV 494
>At1g10155.1 68414.m01145 hypothetical protein
Length = 184
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +2
Query: 587 RKIWCFGPEGT-----APTSWWIAPKEFSTSMKLRTLLWLDSSGPLRK 715
RK W F P G + +W+ P E T +L+ + WL+ +G K
Sbjct: 24 RKAWVFKPSGLNFIWGGDSRYWVIPNEDRTPAELKKVSWLEVTGSYDK 71
>At2g47500.1 68415.m05929 kinesin motor protein-related
Length = 974
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 115 KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGL 222
+N N S+S +VR + K P D+PKL+E L
Sbjct: 218 ENDSNKLSSPSSLSTLVRAVLSDKKPEDVPKLIESL 253
>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 255
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 405 ESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDI 500
E + LCL PN+H + + A+ +P LPE +
Sbjct: 44 EKENLCLYGHPNEHWEVNLPAEEVPPELPEPV 75
>At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc
finger domain-containing protein-related contains Pfam
profiles PF03468: XS domain, weak hit to PF03470: XS
zinc finger domain
Length = 625
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 643 SNPPGCWGGTLGAKAPNLTGFGN 575
SNPP WGG + N++G GN
Sbjct: 68 SNPPRAWGGQQQGRGSNVSGRGN 90
>At1g70160.1 68414.m08073 expressed protein similar to hypothetical
protein GI:4455225 from [Arabidopsis thaliana]
Length = 523
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/90 (25%), Positives = 33/90 (36%)
Frame = +3
Query: 261 NEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPN 440
NE+ E IV + E+ LKD + D + T A E + L K
Sbjct: 272 NEKGEEIIVVIPWDEWWELTLKDNSNPQVALLPLHPDIRAKFNNTAAWEYARSMLGKPYG 331
Query: 441 KHNRLFMKAQPMPDGLPEDIDEGA*IPAMT 530
HN +F + D P +D I M+
Sbjct: 332 YHNMIFSWIDTLGDNYPPPLDAHLVISVMS 361
>At5g15580.1 68418.m01824 expressed protein unknown protein F14P3.18
- Arabidopsis thaliana, EMBL:AC009755
Length = 927
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 490 QRTLMRARESPR*LQDSRSVSYRKVRI*CYRSP*DLV 600
++T + +E+PR DSRS S+R R C P +LV
Sbjct: 216 RKTGAKLKETPRLSLDSRSNSFRSARSSCSPEPQELV 252
>At1g70890.1 68414.m08179 major latex protein-related / MLP-related
low similarity to major latex protein {Papaver
somniferum}[GI:294062] ; contains Pfam profile PF00407:
Pathogenesis-related protein Bet v I family
Length = 158
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 476 HGLSLHEQTVVLVGRL*ETELVRFLSYG-LTVRHDRVRLLDWNASMVLLKILKTDLKMEF 300
HG LHE VG + + +++ G LTV +++ +D +++ K+L+ DL E+
Sbjct: 44 HGCELHEGDWGKVGSI---VIWKYVHDGKLTVGKNKIEAVDPEKNLITFKVLEGDLMNEY 100
Query: 299 SS 294
S
Sbjct: 101 KS 102
>At5g17300.1 68418.m02026 myb family transcription factor similar to
CCA1 [Arabidopsis thaliana] GI:4090569; contains Pfam
profile PF00249: Myb-like DNA-binding domain
Length = 387
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 409 DSSATVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAPAT 284
D+ + S T GS+ L + + S +RSL +S S PA T
Sbjct: 154 DTQSPTSVLSTVGSEALCSLDSSSPNRSLSPVSSASPPAALT 195
>At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 132
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 258 INEESGEHIVAGAGELHLEICLKDLEEDH 344
I EE G G G+ ICL++ E+DH
Sbjct: 63 IKEEEGGREEEGGGKRFCPICLEEYEDDH 91
>At1g31200.1 68414.m03819 expressed protein
Length = 180
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +2
Query: 587 RKIWCFGPEGT-----APTSWWIAPKEFSTSMKLRTLLWLDSSGPLRK 715
RK W P G + +W+ PKE +L+ + WL+ +G K
Sbjct: 21 RKAWISQPSGLNFVWGGDSRYWVIPKEPRMPAELKMVSWLEVTGSFDK 68
>At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 161
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 291 GAGELHLEICLKDLEEDHACIPIKK 365
G E+ ICL++LE+ H I IKK
Sbjct: 111 GFDEIGCSICLEELEDGHEIIRIKK 135
>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
similar to GTPase activating protein [Yarrowia
lipolytica] GI:2370595; contains Pfam profile PF00566:
TBC domain
Length = 720
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 395 GLTVRHDRVRLLDWNASMVLLKILKTDLKMEFSSTSDNV 279
G TV+ DRV W +++ +++TD +EF N+
Sbjct: 348 GGTVKEDRVSEWLWTLHRIVVDVVRTDSHLEFYEDPGNL 386
>At1g26760.1 68414.m03258 SET domain-containing protein contains
Pfam profiles PF00856: SET domain, PF00515:
tetratricopeptide repeat (TPR) domain
Length = 967
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 403 RNRTSSVSQSRPTSTTVCS*RLSPCLMVCQRTLMRAR 513
R + SS S P ++ R S CL +C R RAR
Sbjct: 472 RRQVSSTGGSDPDPDSIAKLRKSLCLALCNRAEARAR 508
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,844,552
Number of Sequences: 28952
Number of extensions: 444580
Number of successful extensions: 1288
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -