Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0154
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   8e-29
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)            31   1.3  
SB_49358| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   7.2  
SB_45840| Best HMM Match : zf-AN1 (HMM E-Value=1.2e-20)                28   9.5  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  124 bits (299), Expect = 8e-29
 Identities = 61/88 (69%), Positives = 67/88 (76%)
 Frame = +1

Query: 463  GLDDYCSCHNCYTENFDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMA 642
            GL      +    +  DGPS K WRDGRGA QN+IPASTGAAKAVGKVIP +NGKLTGMA
Sbjct: 946  GLMTTIHAYTATQKTVDGPSAKNWRDGRGAHQNVIPASTGAAKAVGKVIPEVNGKLTGMA 1005

Query: 643  FRVPVANVSVVDLTVRLGKPASYESHQA 726
            FRVPVA+VSVVDLT RL KPA YE  +A
Sbjct: 1006 FRVPVADVSVVDLTCRLKKPAKYEEIKA 1033



 Score =  120 bits (289), Expect = 1e-27
 Identities = 56/73 (76%), Positives = 63/73 (86%)
 Frame = +2

Query: 254  STTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAK 433
            +T +KA  HL+GGAKKVIISAPSADAPMFV+GVN E YDPS  V+SNASCTTNCLAPL K
Sbjct: 876  TTLEKAGFHLKGGAKKVIISAPSADAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLVK 935

Query: 434  VIHDNFEIVEGLM 472
            VI+DNF + EGLM
Sbjct: 936  VINDNFGLEEGLM 948



 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 45/81 (55%), Positives = 58/81 (71%)
 Frame = +3

Query: 78   VYLFKYDSTHGRFKGSVEVQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFP 257
            VY+FKYDSTHGRFKG+VE +DG LV+NG  ++VF+ +DP  IPWG+ GA+YVVESTGVF 
Sbjct: 817  VYMFKYDSTHGRFKGTVEAKDGKLVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFT 876

Query: 258  LQIKHLLTWREVLKKLLYQLP 320
               K     +   KK++   P
Sbjct: 877  TLEKAGFHLKGGAKKVIISAP 897


>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = +1

Query: 550 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYESHQAK 729
           AQ N I    G    +G  I  +NG + GMA    +AN+S   +    G       HQ  
Sbjct: 374 AQMNGIAGMNGIGNGMGNGIGIMNGNMNGMAGISALANLSCQAMNGFNGLNGMNGIHQIN 433

Query: 730 GQGGS 744
           GQ G+
Sbjct: 434 GQVGN 438


>SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = +1

Query: 550 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYESHQAK 729
           AQ N I    G    +G  I  +NG + GMA    +AN+S   +    G       HQ  
Sbjct: 63  AQMNGIAGMNGIGNGMGNGIGIMNGNMNGMAGISALANLSCQAMNGFNGLNGMNGIHQIN 122

Query: 730 GQGGS 744
           GQ G+
Sbjct: 123 GQVGN 127


>SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)
          Length = 277

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 315 LPVLMPPCLLWVLT*KLMTPLLRSSQMLL 401
           +PV+MP CL  +   K+M PLL  +++LL
Sbjct: 194 IPVIMPHCLAAMSCGKVMAPLLAKAELLL 222


>SB_49358| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 378

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = +3

Query: 252 FPLQIKHLL--TWREVLKKLLYQLPVLMP 332
           FPLQ++ L+  TW + L+++  +L +L+P
Sbjct: 259 FPLQVRELIHVTWPDTLRRIPIKLDMLLP 287


>SB_45840| Best HMM Match : zf-AN1 (HMM E-Value=1.2e-20)
          Length = 187

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +1

Query: 511 DGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPAL--NGKLTGMAFRVPVAN-VSVVDL 681
           DG   K W+D    +Q+   A+TG   ++     ++  +G L   A  VP+A  V+    
Sbjct: 31  DGMCSKCWKDVLRRKQSSPTANTGIQASIQGSCSSMMTDGSLATAAAPVPMATAVATASS 90

Query: 682 TVRLGKPASYESHQ 723
           T  L    S E  Q
Sbjct: 91  TTSLSSEESIEDRQ 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,427,123
Number of Sequences: 59808
Number of extensions: 501728
Number of successful extensions: 1080
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)