Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0151
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0) 157 7e-39
SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87) 31 1.0
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 29 2.3
SB_58040| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08) 28 7.1
SB_13090| Best HMM Match : Atrophin-1 (HMM E-Value=1.8) 27 9.4
SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 27 9.4
SB_8716| Best HMM Match : LTXXQ (HMM E-Value=5) 27 9.4
SB_7224| Best HMM Match : TIL (HMM E-Value=8.2) 27 9.4
>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
Length = 260
Score = 157 bits (381), Expect = 7e-39
Identities = 70/88 (79%), Positives = 80/88 (90%)
Frame = +3
Query: 249 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 428
K +VHCTVRG KAEEILE+GLKV+EYEL + FSATGNFGFGIQEHIDLGIKYDPSIGIY
Sbjct: 59 KISVHCTVRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYDPSIGIY 118
Query: 429 GLDFYVVLGRPGFNVAHRRRKTGKVGFP 512
G+DF+VVLGRPGFN++ R+ K G+VGFP
Sbjct: 119 GMDFFVVLGRPGFNISKRKHKQGRVGFP 146
Score = 110 bits (264), Expect = 1e-24
Identities = 53/59 (89%), Positives = 55/59 (93%)
Frame = +1
Query: 79 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKM 255
N M+ L IRKL LNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK+
Sbjct: 2 NPMKELRIRKLVLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 60
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = +2
Query: 464 FQRSTQKA*DRKSGIPHRLTKEDAMKWFQQK 556
F S +K + G PHRLTK+DAMKWFQQK
Sbjct: 131 FNISKRKHKQGRVGFPHRLTKDDAMKWFQQK 161
>SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87)
Length = 770
Score = 30.7 bits (66), Expect = 1.0
Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 2/115 (1%)
Frame = -3
Query: 464 TWPAKYDVKVQSINSN*GIVLDTQVNVFLNTEAKITRGGE--VVTPQFIFSDFQTPLKDF 291
+W A ++ Q + QV+ NT R + + TP + D +TP +D
Sbjct: 144 SWNAIDSLRAQKVRQMEHAQTRQQVSPGSNTHLNSRREQDPNIATPASLRGDTETPARDH 203
Query: 290 FCFSSSDCTMDSIFSLRRIPKDRTVYLALENTGCCPVSCSNTLAARVSLSPDSPT 126
S T SI S R + + E +G P TL + +PD+PT
Sbjct: 204 MTSQSGQSTPSSILSERFLLQSPFKDAEPETSG-SPYQRVFTLDSPTVSTPDNPT 257
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 140 VTG*LVPPRCWSNSQDNSLYFP 205
VT LVPP W+ SQD +Y+P
Sbjct: 742 VTPPLVPPMPWTGSQDAGMYYP 763
>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 403
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -1
Query: 373 PKPKLPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVQWTASFHY 242
P P++P + L + L T+KPL RIS++L+ ++Q + S+ Y
Sbjct: 303 PLPRIPTSLSLVSLQAPPLYTYKPLPRISTSLSLVSLQASPSYPY 347
>SB_58040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 100 IRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRS---FGIRRNEKMLSIVQ 270
IR++CL I E G + AK +Q++ QP+ K Y V + G ++ + L +Q
Sbjct: 6 IRRICLEIEEKEKGQETQKQAKKEDQVSEPQPI--KITYDVMAALDAGKKKKKSKLERIQ 63
Query: 271 S 273
S
Sbjct: 64 S 64
>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
Length = 551
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 333 RRDNFSATGNFGFGIQEHIDLGIKYD 410
++ ++SATG+F ++EHI G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331
>SB_13090| Best HMM Match : Atrophin-1 (HMM E-Value=1.8)
Length = 988
Score = 27.5 bits (58), Expect = 9.4
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 2/115 (1%)
Frame = -3
Query: 464 TWPAKYDVKVQSINSN*GIVLDTQVNVFLNTEAKITRGGE--VVTPQFIFSDFQTPLKDF 291
+W A ++ Q + QV+ NT R + + TP + D +TP +D
Sbjct: 776 SWNAIDSLRAQKVRQMEHAQTRQQVSPGSNTHLNSRREQDPNIATPASLRGDTETPARDH 835
Query: 290 FCFSSSDCTMDSIFSLRRIPKDRTVYLALENTGCCPVSCSNTLAARVSLSPDSPT 126
S T SI S R + + E +G TL + +PD+PT
Sbjct: 836 MTSQSGQSTPSSILSERFLLQSPFKDAEPETSG-SSYQRVFTLDSPTVSTPDNPT 889
>SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 139 GDRLTRAAKVLEQLTGQQPVFSKARY 216
G R TR A +QLT + VFSK Y
Sbjct: 66 GSRRTRTAFTHQQLTALEKVFSKTHY 91
>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 379
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -1
Query: 373 PKPKLPVAEKL-SRRNSYSLTFKPLSRISSALAPRTVQWTASFHY 242
P P++P + L S S +KPLSRI ++ + ++Q +AS+ Y
Sbjct: 299 PLPRIPTSPSLVSLLARPSYLYKPLSRIPTSPSLVSLQASASYPY 343
>SB_8716| Best HMM Match : LTXXQ (HMM E-Value=5)
Length = 263
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +1
Query: 127 VGESGDRLTRAAKVLEQ----LTGQQPVFSKARYTVRSFGIRRNEKMLSIVQSEELKQKK 294
VG SG L+ K Q +T F K RY + G++ + ++ V +ELK++K
Sbjct: 13 VGSSGAILSPEQKAAFQSSLVITRCNYKFEKVRYWGKILGVKNDYFIIQGVGKDELKERK 72
Query: 295 SL 300
+L
Sbjct: 73 TL 74
>SB_7224| Best HMM Match : TIL (HMM E-Value=8.2)
Length = 147
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/69 (26%), Positives = 25/69 (36%)
Frame = -1
Query: 487 RLLCATLKPGRXXXXXXXXXXXXIEGSYLIPKSMCS*IPKPKLPVAEKLSRRNSYSLTFK 308
R C T+KP IP C K K P+++ L YS+ F+
Sbjct: 77 RCYCLTVKPCGSKISADPRICPENVADRRIPPLECDIQAKIKTPISKTLLHVRLYSIVFR 136
Query: 307 PLSRISSAL 281
P S+L
Sbjct: 137 PTKTQKSSL 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,759,604
Number of Sequences: 59808
Number of extensions: 412429
Number of successful extensions: 1074
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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