Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0151
(625 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 130 1e-30
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 129 2e-30
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 129 2e-30
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 129 2e-30
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 129 2e-30
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 37 0.013
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con... 34 0.088
At4g26330.1 68417.m03786 subtilase family protein contains simil... 30 1.1
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 29 2.5
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 29 3.3
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 29 3.3
At4g14280.1 68417.m02201 hypothetical protein 28 5.8
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ... 28 5.8
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 130 bits (313), Expect = 1e-30
Identities = 62/86 (72%), Positives = 69/86 (80%)
Frame = +3
Query: 249 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 428
K A + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 56 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 115
Query: 429 GLDFYVVLGRPGFNVAHRRRKTGKVG 506
G+DFYVVL RPG+ VA RRR +VG
Sbjct: 116 GMDFYVVLERPGYRVARRRRCKARVG 141
Score = 98.3 bits (234), Expect = 4e-21
Identities = 47/61 (77%), Positives = 54/61 (88%)
Frame = +1
Query: 85 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKMLSI 264
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEK+
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 265 V 267
V
Sbjct: 61 V 61
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +2
Query: 503 GIPHRLTKEDAMKWFQQKYDG 565
GI HR+TK+DAMKWFQ KY+G
Sbjct: 141 GIQHRVTKDDAMKWFQVKYEG 161
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 129 bits (311), Expect = 2e-30
Identities = 62/86 (72%), Positives = 69/86 (80%)
Frame = +3
Query: 249 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 428
K A + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 429 GLDFYVVLGRPGFNVAHRRRKTGKVG 506
G+DFYVVL RPG+ VA RRR +VG
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVG 151
Score = 102 bits (244), Expect = 2e-22
Identities = 50/69 (72%), Positives = 57/69 (82%)
Frame = +1
Query: 61 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 240
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
Query: 241 RNEKMLSIV 267
RNEK+ V
Sbjct: 63 RNEKIACYV 71
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +2
Query: 503 GIPHRLTKEDAMKWFQQKYDG 565
GI HR+TK+DAMKWFQ KY+G
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEG 171
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 129 bits (311), Expect = 2e-30
Identities = 62/86 (72%), Positives = 69/86 (80%)
Frame = +3
Query: 249 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 428
K A + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 56 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 115
Query: 429 GLDFYVVLGRPGFNVAHRRRKTGKVG 506
G+DFYVVL RPG+ VA RRR +VG
Sbjct: 116 GMDFYVVLERPGYRVARRRRCKTRVG 141
Score = 98.3 bits (234), Expect = 4e-21
Identities = 47/61 (77%), Positives = 54/61 (88%)
Frame = +1
Query: 85 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKMLSI 264
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEK+
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 265 V 267
V
Sbjct: 61 V 61
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +2
Query: 503 GIPHRLTKEDAMKWFQQKYDG 565
GI HR+TK+DAMKWFQ KY+G
Sbjct: 141 GIQHRVTKDDAMKWFQVKYEG 161
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 129 bits (311), Expect = 2e-30
Identities = 62/86 (72%), Positives = 69/86 (80%)
Frame = +3
Query: 249 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 428
K A + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 429 GLDFYVVLGRPGFNVAHRRRKTGKVG 506
G+DFYVVL RPG+ VA RRR +VG
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVG 151
Score = 102 bits (244), Expect = 2e-22
Identities = 50/69 (72%), Positives = 57/69 (82%)
Frame = +1
Query: 61 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 240
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
Query: 241 RNEKMLSIV 267
RNEK+ V
Sbjct: 63 RNEKIACYV 71
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +2
Query: 503 GIPHRLTKEDAMKWFQQKYDG 565
GI HR+TK+DAMKWFQ KY+G
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEG 171
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 129 bits (311), Expect = 2e-30
Identities = 62/86 (72%), Positives = 69/86 (80%)
Frame = +3
Query: 249 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 428
K A + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 429 GLDFYVVLGRPGFNVAHRRRKTGKVG 506
G+DFYVVL RPG+ VA RRR +VG
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVG 151
Score = 102 bits (244), Expect = 2e-22
Identities = 50/69 (72%), Positives = 57/69 (82%)
Frame = +1
Query: 61 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 240
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
Query: 241 RNEKMLSIV 267
RNEK+ V
Sbjct: 63 RNEKIACYV 71
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +2
Query: 503 GIPHRLTKEDAMKWFQQKYDG 565
GI HR+TK+DAMKWFQ KY+G
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEG 171
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 36.7 bits (81), Expect = 0.013
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +3
Query: 291 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 455
E+LE+GLK EY + S +G G GI+ H +D GIK D +IG +D Y G
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
contains Pfam profiles PF00673: ribosomal L5P family
C-terminus, PF00281: ribosomal protein L5
Length = 262
Score = 33.9 bits (74), Expect = 0.088
Identities = 16/62 (25%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = +1
Query: 79 NVMRNLHIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 249
N+ + ++K+ +N +G++ L A K + +TGQ+P+ ++AR ++ +F IR ++
Sbjct: 79 NIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQ 138
Query: 250 KM 255
+
Sbjct: 139 PL 140
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 367 PKLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVQWTASFH 245
P++ V K + +SY +TFKP S + WT H
Sbjct: 687 PRILVFSKCQQEHSYYVTFKPTEIFSGRYVFGEIMWTNGLH 727
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 257 SIFSLRRIPKDRTVYLALENTGCCPVSCSN-TLAARVSLSPDSPTHM 120
S FSLR P DR+ E P CSN + ++ L P++ TH+
Sbjct: 241 SNFSLRTPPVDRSASRLEEECNLPPELCSNCSHGIKLGLCPEASTHV 287
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 288 EEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDPSIGIYGLDFYVVL 452
E+ +E L+ RE L+ D F+ G GF G + +DLG + + GL V L
Sbjct: 130 EQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFL 185
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 28.7 bits (61), Expect = 3.3
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +1
Query: 205 KARYTVRSFGIRRNEKMLSIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVF-- 378
+A +TV GI + S S K+ G+ K N G+ + R+ +F
Sbjct: 140 QATWTVSGVGISSFRVLQSSSISLLRNLKRISDGIFKPILDN-GLREATTRIGRQEIFDR 198
Query: 379 KNTLTWVSSTIPQLEFMDWTFTSYLAGQV 465
+ TLTW +S +P L + W + S ++
Sbjct: 199 RTTLTWKNSEVPLLPYARWLYISSYVSRI 227
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 385 TLTWVSSTIPQLEFMDWTFTS 447
T TW SS +P L + W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187
>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
similar to SP|Q92973 Importin beta-2 subunit
(Transportin) {Homo sapiens}; contains Pfam profile
PF03810: Importin-beta N-terminal domain
Length = 891
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 55 EGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKAR 213
EG +++++ ++R L LN C+ E+ D A ++ L PV+ + R
Sbjct: 650 EGLGSGIESLVQQSNLRDLLLNCCIDEAADVRQSAFALMGDLARVFPVYLQPR 702
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,059,622
Number of Sequences: 28952
Number of extensions: 280623
Number of successful extensions: 826
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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