Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0150
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S... 150 1e-37
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac... 150 1e-37
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo... 28 1.3
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 27 1.7
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 25 6.7
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 8.8
>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 150 bits (364), Expect = 1e-37
Identities = 67/87 (77%), Positives = 76/87 (87%)
Frame = +1
Query: 244 KDCCHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 423
K CH TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGIY
Sbjct: 64 KIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIY 123
Query: 424 GLDFYVVLGRPGFNVAHRRRKTGKVGF 504
G+DFYVV+ RPG VA R+ + G+VG+
Sbjct: 124 GMDFYVVMDRPGMRVARRKAQRGRVGY 150
Score = 101 bits (242), Expect = 8e-23
Identities = 53/82 (64%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Frame = +2
Query: 62 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRN 241
+ ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRN
Sbjct: 3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62
Query: 242 EKIAAIVQSEELKQKKSL-RGV 304
EKIA V K ++ L RG+
Sbjct: 63 EKIACHVTVRGPKAEEILERGL 84
Score = 29.1 bits (62), Expect = 0.54
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 474 QKA*DRKSGISPRLTKEDAMKWFQQKYD 557
+KA + G + ++ ED + WF+QKYD
Sbjct: 141 RKAQRGRVGYTHKINAEDTINWFKQKYD 168
>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 150 bits (364), Expect = 1e-37
Identities = 67/87 (77%), Positives = 76/87 (87%)
Frame = +1
Query: 244 KDCCHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 423
K CH TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGIY
Sbjct: 64 KIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIY 123
Query: 424 GLDFYVVLGRPGFNVAHRRRKTGKVGF 504
G+DFYVV+ RPG VA R+ + G+VG+
Sbjct: 124 GMDFYVVMDRPGMRVARRKAQRGRVGY 150
Score = 101 bits (242), Expect = 8e-23
Identities = 53/82 (64%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Frame = +2
Query: 62 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRN 241
+ ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRN
Sbjct: 3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62
Query: 242 EKIAAIVQSEELKQKKSL-RGV 304
EKIA V K ++ L RG+
Sbjct: 63 EKIACHVTVRGPKAEEILERGL 84
Score = 29.1 bits (62), Expect = 0.54
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 474 QKA*DRKSGISPRLTKEDAMKWFQQKYD 557
+KA + G + ++ ED + WF+QKYD
Sbjct: 141 RKAQRGRVGYTHKINAEDTINWFKQKYD 168
>SPCC1739.05 |set5||histone lysine methyltransferase Set5
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 319
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -2
Query: 395 IPKSMCS*IPKPKLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVQWQQSFH 240
IP I K K+PV ++ T I AL+ +T + Q++FH
Sbjct: 14 IPNKGMGMIAKVKIPVGTRIFAETPLIRTKSDAKEIEEALSTKTKEEQEAFH 65
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 233 GYQKTALYT*PWKIQAVVL*VAPTPWRHESACHRIHQHI 117
G +Y W I A +L V P PWR+ S+ + + I
Sbjct: 121 GLYSHPIYPLLWVITAFILIVFPFPWRYRSSQRGLRKSI 159
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +2
Query: 92 HIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 235
H++ + N +G A K+ +QLTG+ R GIR
Sbjct: 604 HLQNISNNYMIGAINAENGEANKLKDQLTGEYKTVPNVAIDYRDHGIR 651
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 411 NWNLWTGLLRRTWPARFQRSTQK 479
NW+ L R WP F RS+Q+
Sbjct: 644 NWSSIGRLRRSEWPRSFNRSSQQ 666
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,067
Number of Sequences: 5004
Number of extensions: 52466
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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