Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0150
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   143   8e-35
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   141   4e-34
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    30   1.2  
Z81531-10|CAE17807.1|  367|Caenorhabditis elegans Hypothetical p...    27   8.2  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  143 bits (347), Expect = 8e-35
 Identities = 65/86 (75%), Positives = 73/86 (84%)
 Frame = +1

Query: 244 KDCCHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 423
           K   HCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIY
Sbjct: 74  KIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIY 133

Query: 424 GLDFYVVLGRPGFNVAHRRRKTGKVG 501
           G+DFYVVL R G  +A RRR  G+VG
Sbjct: 134 GMDFYVVLDRAGRRIAKRRRAPGRVG 159



 Score =  118 bits (285), Expect = 3e-27
 Identities = 58/71 (81%), Positives = 62/71 (87%)
 Frame = +2

Query: 41  KGEEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 220
           K  E  E  ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR
Sbjct: 6   KQTEIREKKARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR 65

Query: 221 SFGIRRNEKIA 253
           +FGIRRNEKIA
Sbjct: 66  TFGIRRNEKIA 76



 Score = 35.1 bits (77), Expect = 0.041
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +3

Query: 498 GISPRLTKEDAMKWFQQKYDG 560
           G S R+ +E+++KWFQQKYDG
Sbjct: 159 GPSHRVEREESIKWFQQKYDG 179


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  141 bits (341), Expect = 4e-34
 Identities = 63/86 (73%), Positives = 72/86 (83%)
 Frame = +1

Query: 244 KDCCHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 423
           K   HCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIY
Sbjct: 74  KIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIY 133

Query: 424 GLDFYVVLGRPGFNVAHRRRKTGKVG 501
           G+DFYVVL R G  V+ RRR  G++G
Sbjct: 134 GMDFYVVLNRNGVRVSKRRRAPGRIG 159



 Score =  118 bits (284), Expect = 3e-27
 Identities = 58/71 (81%), Positives = 61/71 (85%)
 Frame = +2

Query: 41  KGEEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 220
           K  E  E   +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR
Sbjct: 6   KQTEIREKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR 65

Query: 221 SFGIRRNEKIA 253
           +FGIRRNEKIA
Sbjct: 66  TFGIRRNEKIA 76



 Score = 35.9 bits (79), Expect = 0.023
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +3

Query: 498 GISPRLTKEDAMKWFQQKYDG 560
           G S R+ KE+ +KWFQQKYDG
Sbjct: 159 GPSHRVDKEETIKWFQQKYDG 179


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 262 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 420
           ++R   AEE+  RG  +  Y E+RR     TG FG G +  +   I +  S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406


>Z81531-10|CAE17807.1|  367|Caenorhabditis elegans Hypothetical
           protein F36D3.13 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 267 DCTMAAIFSLRRIPKDRTVYLALENTGCCP 178
           D T  A+F +  IP+  T Y  LEN  C P
Sbjct: 72  DFTRIALFLVMNIPQLWTTYQNLENPDCIP 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,637,635
Number of Sequences: 27780
Number of extensions: 295140
Number of successful extensions: 783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)