Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0150
(621 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 132 2e-31
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 131 3e-31
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 131 3e-31
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 131 3e-31
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 131 3e-31
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 37 0.012
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con... 35 0.050
At4g26330.1 68417.m03786 subtilase family protein contains simil... 29 3.3
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 29 3.3
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 29 3.3
At4g14280.1 68417.m02201 hypothetical protein 28 5.7
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 28 5.7
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ... 28 5.7
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 132 bits (319), Expect = 2e-31
Identities = 62/86 (72%), Positives = 69/86 (80%)
Frame = +1
Query: 244 KDCCHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 423
K C+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 56 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 115
Query: 424 GLDFYVVLGRPGFNVAHRRRKTGKVG 501
G+DFYVVL RPG+ VA RRR +VG
Sbjct: 116 GMDFYVVLERPGYRVARRRRCKARVG 141
Score = 101 bits (243), Expect = 3e-22
Identities = 49/61 (80%), Positives = 55/61 (90%)
Frame = +2
Query: 80 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAAI 259
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 260 V 262
V
Sbjct: 61 V 61
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 498 GISPRLTKEDAMKWFQQKYDG 560
GI R+TK+DAMKWFQ KY+G
Sbjct: 141 GIQHRVTKDDAMKWFQVKYEG 161
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 131 bits (317), Expect = 3e-31
Identities = 62/86 (72%), Positives = 69/86 (80%)
Frame = +1
Query: 244 KDCCHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 423
K C+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 424 GLDFYVVLGRPGFNVAHRRRKTGKVG 501
G+DFYVVL RPG+ VA RRR +VG
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVG 151
Score = 105 bits (253), Expect = 2e-23
Identities = 52/69 (75%), Positives = 58/69 (84%)
Frame = +2
Query: 56 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 235
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
Query: 236 RNEKIAAIV 262
RNEKIA V
Sbjct: 63 RNEKIACYV 71
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 498 GISPRLTKEDAMKWFQQKYDG 560
GI R+TK+DAMKWFQ KY+G
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEG 171
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 131 bits (317), Expect = 3e-31
Identities = 62/86 (72%), Positives = 69/86 (80%)
Frame = +1
Query: 244 KDCCHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 423
K C+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 56 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 115
Query: 424 GLDFYVVLGRPGFNVAHRRRKTGKVG 501
G+DFYVVL RPG+ VA RRR +VG
Sbjct: 116 GMDFYVVLERPGYRVARRRRCKTRVG 141
Score = 101 bits (243), Expect = 3e-22
Identities = 49/61 (80%), Positives = 55/61 (90%)
Frame = +2
Query: 80 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAAI 259
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 260 V 262
V
Sbjct: 61 V 61
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 498 GISPRLTKEDAMKWFQQKYDG 560
GI R+TK+DAMKWFQ KY+G
Sbjct: 141 GIQHRVTKDDAMKWFQVKYEG 161
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 131 bits (317), Expect = 3e-31
Identities = 62/86 (72%), Positives = 69/86 (80%)
Frame = +1
Query: 244 KDCCHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 423
K C+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 424 GLDFYVVLGRPGFNVAHRRRKTGKVG 501
G+DFYVVL RPG+ VA RRR +VG
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVG 151
Score = 105 bits (253), Expect = 2e-23
Identities = 52/69 (75%), Positives = 58/69 (84%)
Frame = +2
Query: 56 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 235
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
Query: 236 RNEKIAAIV 262
RNEKIA V
Sbjct: 63 RNEKIACYV 71
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 498 GISPRLTKEDAMKWFQQKYDG 560
GI R+TK+DAMKWFQ KY+G
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEG 171
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 131 bits (317), Expect = 3e-31
Identities = 62/86 (72%), Positives = 69/86 (80%)
Frame = +1
Query: 244 KDCCHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 423
K C+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 424 GLDFYVVLGRPGFNVAHRRRKTGKVG 501
G+DFYVVL RPG+ VA RRR +VG
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVG 151
Score = 105 bits (253), Expect = 2e-23
Identities = 52/69 (75%), Positives = 58/69 (84%)
Frame = +2
Query: 56 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 235
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
Query: 236 RNEKIAAIV 262
RNEKIA V
Sbjct: 63 RNEKIACYV 71
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 498 GISPRLTKEDAMKWFQQKYDG 560
GI R+TK+DAMKWFQ KY+G
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEG 171
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 36.7 bits (81), Expect = 0.012
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +1
Query: 286 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 450
E+LE+GLK EY + S +G G GI+ H +D GIK D +IG +D Y G
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
contains Pfam profiles PF00673: ribosomal L5P family
C-terminus, PF00281: ribosomal protein L5
Length = 262
Score = 34.7 bits (76), Expect = 0.050
Identities = 17/66 (25%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 74 NVMRNLHIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 244
N+ + ++K+ +N +G++ L A K + +TGQ+P+ ++AR ++ +F IR ++
Sbjct: 79 NIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQ 138
Query: 245 KIAAIV 262
+ V
Sbjct: 139 PLGIAV 144
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -2
Query: 362 PKLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVQWQQSFH 240
P++ V K + +SY +TFKP S + W H
Sbjct: 687 PRILVFSKCQQEHSYYVTFKPTEIFSGRYVFGEIMWTNGLH 727
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 283 EEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDPSIGIYGLDFYVVL 447
E+ +E L+ RE L+ D F+ G GF G + +DLG + + GL V L
Sbjct: 130 EQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFL 185
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 246 FSLRRIPKDRTVYLALENTGCCPVSCSN-TLAARVSLSPDSPTHM 115
FSLR P DR+ E P CSN + ++ L P++ TH+
Sbjct: 243 FSLRTPPVDRSASRLEEECNLPPELCSNCSHGIKLGLCPEASTHV 287
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 380 TLTWVSSTIPQLEFMDWTFTS 442
T TW SS +P L + W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 27.9 bits (59), Expect = 5.7
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +2
Query: 200 KARYTVRSFGIRRNEKIAAIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVF-- 373
+A +TV GI + + S K+ G+ K N G+ + R+ +F
Sbjct: 140 QATWTVSGVGISSFRVLQSSSISLLRNLKRISDGIFKPILDN-GLREATTRIGRQEIFDR 198
Query: 374 KNTLTWVSSTIPQLEFMDWTFTSYLAGQV 460
+ TLTW +S +P L + W + S ++
Sbjct: 199 RTTLTWKNSEVPLLPYARWLYISSYVSRI 227
>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
similar to SP|Q92973 Importin beta-2 subunit
(Transportin) {Homo sapiens}; contains Pfam profile
PF03810: Importin-beta N-terminal domain
Length = 891
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 50 EGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKAR 208
EG +++++ ++R L LN C+ E+ D A ++ L PV+ + R
Sbjct: 650 EGLGSGIESLVQQSNLRDLLLNCCIDEAADVRQSAFALMGDLARVFPVYLQPR 702
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,909,935
Number of Sequences: 28952
Number of extensions: 276436
Number of successful extensions: 771
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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