Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0147
         (708 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    40   0.045
UniRef50_UPI00006CD1CC Cluster: hypothetical protein TTHERM_0012...    35   2.3  
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    35   2.3  
UniRef50_Q9VU16 Cluster: CG11008-PA; n=2; Drosophila melanogaste...    33   6.9  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 40.3 bits (90), Expect = 0.045
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = -1

Query: 396 CPLSFSPDLLSGSHFRSGGRF 334
           CPLSFSPDLLSGS FR+G  +
Sbjct: 395 CPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_UPI00006CD1CC Cluster: hypothetical protein
           TTHERM_00129630; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00129630 - Tetrahymena
           thermophila SB210
          Length = 1586

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 236 RGYFSVTWLVGELTGLKPDDDANT-NPSKSRASQNLPPDRKCDP 364
           RG+F++TW + E+TG+  D+   + N     ASQNL      DP
Sbjct: 686 RGFFNLTWSLEEITGITKDEQIQSINQIMKTASQNLNRTLIIDP 729


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = -1

Query: 393 PLSFSPDLLSGSHFRSGGRFCEARLLLG 310
           P+ F       S FRS GRFCEA LLLG
Sbjct: 74  PMKFLAGSSQSSRFRSDGRFCEALLLLG 101


>UniRef50_Q9VU16 Cluster: CG11008-PA; n=2; Drosophila
            melanogaster|Rep: CG11008-PA - Drosophila melanogaster
            (Fruit fly)
          Length = 1988

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 20/46 (43%), Positives = 23/46 (50%)
 Frame = +2

Query: 284  KPDDDANTNPSKSRASQNLPPDRKCDPLRRSGEKLSGHQSNCEITP 421
            KP  D   +PSKS     +   R  DPL+  GE  S H S  EITP
Sbjct: 1256 KPFVDEVLSPSKSGTEATVDCSRIDDPLKTDGEATSSHHS--EITP 1299


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 606,418,317
Number of Sequences: 1657284
Number of extensions: 10310348
Number of successful extensions: 22048
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22046
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)