Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0147
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0789 - 6150257-6151046,6151167-6151390,6151816-6151991,615...    29   2.7  
03_02_0882 - 12121917-12124446,12124739-12124919,12125057-121251...    29   2.7  
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423...    28   8.4  

>07_01_0789 -
           6150257-6151046,6151167-6151390,6151816-6151991,
           6152778-6153801
          Length = 737

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 266 GELTGLKPDDDANTNPSKSRASQNLPPDRKCDPL 367
           G+  G + DDDA   P     SQ  PP R   PL
Sbjct: 160 GDAGGRRGDDDAELKPPPPLPSQRPPPSRSPPPL 193


>03_02_0882 -
           12121917-12124446,12124739-12124919,12125057-12125134,
           12125731-12125764,12125864-12125975,12126053-12126238,
           12126505-12126575
          Length = 1063

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = +2

Query: 257 WLVGELTGLKPDDDANTNPSKSRA-SQNLPPDRKCDPLRRSGEKLSGHQSNCEITPSLIA 433
           W  G    L  + +  T  S S++ S N   D + D      E  S   SN  +TPS+  
Sbjct: 420 WSAGMGDSLNNNSEEKTIDSTSQSKSNNTGSDSEKDGAETQAEPGSASASNTVVTPSVEG 479

Query: 434 LVYNFRTYVLKTLKTGESQHS 496
              N +   +   +T  S H+
Sbjct: 480 FHTNMQGVAMPETETAVSSHT 500


>01_06_1263 +
           35840502-35841308,35841763-35841969,35842272-35842370,
           35843361-35843464,35844521-35844698,35844774-35845244,
           35845383-35845523,35846290-35846349,35846427-35846490,
           35847295-35847524,35847606-35847704
          Length = 819

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -1

Query: 513 VNTNVTECCDSPVFNVLRT*VRKL*TKAINDGVISQFDWC--PLSFSPDLLSGSHFRSGG 340
           V  NV+ C D    + ++  ++++ TKA  DG++   +W   PL   P+ ++ ++  S  
Sbjct: 349 VGRNVSRCKDDAQRSAVQNILKEIITKATADGILHTKNWDIEPLVPLPENITSTNLTSSA 408

Query: 339 R 337
           +
Sbjct: 409 K 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,024,549
Number of Sequences: 37544
Number of extensions: 276457
Number of successful extensions: 531
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)