Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0147
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19851| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_35627| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   6.5  

>SB_19851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 290 DDDANTNPSKSRASQNLPP 346
           DDD N N  K+ AS+NLPP
Sbjct: 160 DDDDNNNKKKASASKNLPP 178


>SB_35627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 227 YSLRGYFSVTWL-VGELTGLKPDD 295
           Y   GY++V WL V  L+G +P+D
Sbjct: 43  YPYNGYYAVAWLCVATLSGFRPED 66


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 322 ALARVRVSIVIRFEPR--ELTY*PRYAEIAPKAISLGREKKKKRLV 191
           A+  V+ S V+   P   ++ Y P Y E+ PKA SL    +K R V
Sbjct: 820 AIGNVKQSEVLGLTPHADDVVYAPGYTELQPKAASLAPALQKDRPV 865


>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 1841

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 328 FAESTTGSEMRPTEKIRRETQWAPVEL*DHTIINSFSLQLSY 453
           F E TTG      E I R+  WA +EL +  I+N+ SL + Y
Sbjct: 266 FIEETTG------EWIERQGGWAGIELEEDIILNAESLAVKY 301


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,531,399
Number of Sequences: 59808
Number of extensions: 318465
Number of successful extensions: 581
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)