Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0147
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37139-6|CAB63431.2|  591|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    27   9.9  
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z37139-6|CAB63431.2|  591|Caenorhabditis elegans Hypothetical
           protein C14B1.10 protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 269 ELTGLKPDDDANTN-PSKSRASQNLPPDRKCDPLRRSGEKLSGHQSNCEITPSLIALVYN 445
           EL GL P    N++ P      +NLP   KC+  R +  K+     + ++   L+ LV N
Sbjct: 103 ELHGLIPPSLKNSHQPFAISYVENLPEATKCEDFRPANLKIIEEYVSSDLEKELVDLVTN 162


>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
           protein C32E8.11 protein.
          Length = 1927

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 435 KAINDGVISQFDWCPLSFSPDLLSGSH 355
           K  NDG I++FD+   SF P+L    H
Sbjct: 468 KYYNDGKIARFDFTSRSFPPELRRSLH 494


>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
           protein F54G2.2 protein.
          Length = 1023

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = -2

Query: 611 IDEILKHSYK-IDNILASSDSVIRLSNIIYGKTRLTQMLQSVAIRLFLTS*EHKYESCRL 435
           +DEI + +YK +DN   +  S I+ + ++   +R T +L  +   L  T    +YE+CR 
Sbjct: 441 LDEIARIAYKRVDN--PAELSSIKCTKLMDAVSRNTNLLCLIDTMLMGTPEAEQYEACR- 497

Query: 434 KLLM 423
           KL M
Sbjct: 498 KLAM 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,968,745
Number of Sequences: 27780
Number of extensions: 248315
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)