Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0147
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ...    29   3.0  
At4g16230.1 68417.m02463 GDSL-motif lipase/hydrolase family prot...    28   5.3  
At5g47430.1 68418.m05844 expressed protein                             28   7.0  
At3g62700.1 68416.m07043 glutathione-conjugate transporter, puta...    28   7.0  
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep...    27   9.2  

>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
           (UBP16) similar to ubiquitin-specific protease 16
           GI:11993477 [Arabidopsis thaliana]
          Length = 1008

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +2

Query: 284 KPDDDANTNPSKSRASQNLPPDR---KCDPLRRSGE 382
           KP+DDA  N S+SR+  +L  DR     DP  +S +
Sbjct: 278 KPEDDAGQNQSQSRSLHSLVTDRHPVSADPSLKSSD 313


>At4g16230.1 68417.m02463 GDSL-motif lipase/hydrolase family protein
           similar to SP|P40602 Anther-specific proline-rich
           protein APG precursor {Arabidopsis thaliana}; contains
           Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase
          Length = 340

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 356 CDPLRRSGEKLSGHQSNCEITPSLIALVYNFRTYVL 463
           C P  R  + ++G++  C + P+ +A +YN +  +L
Sbjct: 197 CIPFERESDPMAGYE--CSVEPNEVAQMYNLKLKIL 230


>At5g47430.1 68418.m05844 expressed protein 
          Length = 879

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +2

Query: 266 GELTGLKPDDDANTN-----PSKSRASQNLPPDRKCDPLRRSGEKLSGHQSNC 409
           G +  LKP++DA        PS +R+   LPP+ KC PL +   K +   S C
Sbjct: 260 GAVAVLKPNEDAFEKEMEGLPSTTRSVGELPPELKC-PLCKEVMKDAALTSKC 311


>At3g62700.1 68416.m07043 glutathione-conjugate transporter, putative
            similar to glutathione-conjugate transporter AtMRP4
            GI:2959767 from [Arabidopsis thaliana]
          Length = 1539

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 316  QEPCFAESTTGSEMRPTEKIRRETQWAPVE 405
            QEP   E T  S + PTEK   E  W  +E
Sbjct: 1379 QEPVLFEGTVRSNIDPTEKYSDEEIWKSLE 1408


>At1g18080.1 68414.m02238 WD-40 repeat family protein /
           auxin-dependent protein (ARCA) / guanine
           nucleotide-binding protein beta subunit, putative
           identical to SP|O24456 Guanine nucleotide-binding
           protein beta subunit-like protein (WD-40 repeat
           auxin-dependent protein ARCA) {Arabidopsis thaliana};
           contains 7 WD-40 repeats (PF00400)
          Length = 327

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 593 HSYKIDNILASSDSVIRLSNIIYGKTRLTQMLQSVAIRLFL 471
           HS+ +++++ SSD    LS    G+ RL  +   V+ R F+
Sbjct: 62  HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,067,007
Number of Sequences: 28952
Number of extensions: 229812
Number of successful extensions: 496
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)