Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0146
         (766 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    24   1.5  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   2.7  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   8.2  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 181 LPLALQFRIL*IWYLLQRY 237
           +PL  +FR L +W++L+ Y
Sbjct: 349 IPLGRRFRALKLWFVLRLY 367


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 664 ERDCLDTNNCDKTRYESGCT 723
           E DC D   CDK    +G T
Sbjct: 48  EGDCRDVVRCDKNSDNNGAT 67


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 675 AIPLMVLATTPKRTASIA 622
           A PL +L   P+RTAS A
Sbjct: 193 ASPLPLLVPIPQRTASTA 210


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,453
Number of Sequences: 336
Number of extensions: 4088
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)