Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0146
(766 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.047
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.062
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.083
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 31 1.0
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 30 2.3
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 29 3.1
SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_45628| Best HMM Match : DUF1639 (HMM E-Value=0.19) 29 3.1
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 29 4.1
SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0) 29 5.4
SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 28 7.2
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15) 28 9.5
SB_44265| Best HMM Match : DUF1032 (HMM E-Value=4e-06) 28 9.5
SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35) 28 9.5
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 28 9.5
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 35.5 bits (78), Expect = 0.047
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +2
Query: 503 RWLWRGMIPSVARCVPGVGLYFSSLHW---LKGKMGKSTGDLKAIEAVLLGVVARTMSGI 673
R +RGM + R +P LYF S + L G+ +L I G +A T+S I
Sbjct: 314 RGCFRGMAITTTRDIPAFALYFGSFQYVCELLTPKGEHVDNLSPIRLFFSGGIAGTLSWI 373
Query: 674 ALIPITVIK 700
P+ ++K
Sbjct: 374 LTYPVDMVK 382
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 298 VTNYHPVFKAFLAGSFSGTFSTVLFQPLDLVKTRLQ 405
V N P+ + F +G +GT S +L P+D+VK+ Q
Sbjct: 352 VDNLSPI-RLFFSGGIAGTLSWILTYPVDMVKSCYQ 386
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 35.1 bits (77), Expect = 0.062
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 509 LWRGMIPSVARCVPGVGLYFSSLHWLKGKMGKSTGDLKAIEAVLLGVVARTM 664
LWRG+ P++ VP +YF+ LK G + +L G+ AR +
Sbjct: 79 LWRGLPPTMVMAVPNTVIYFTLYDQLKISYGFKNNETNLWSPMLAGITARKL 130
Score = 32.7 bits (71), Expect = 0.33
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 328 FLAGSFSGTFSTVLFQPLDLVKTRLQ 405
FL+G+ SG F+ ++ QP D+VKT Q
Sbjct: 164 FLSGAISGLFAALITQPFDVVKTHRQ 189
>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 612
Score = 34.7 bits (76), Expect = 0.083
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 503 RWLWRGMIPSVARCVPGVGLYFSSLHWLK--GKMGKSTGDLKAIEAVLLGVVARTMSGIA 676
R L+ G++ +VAR P GLY +K K GDL + + + G++A M+ +
Sbjct: 481 RGLYSGLVATVARDAPFSGLYLMFYTQIKRRAKGLLQVGDLTSGQNFICGIMAGAMASVV 540
Query: 677 LIPITVIK 700
P V+K
Sbjct: 541 TQPADVVK 548
Score = 33.1 bits (72), Expect = 0.25
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = +2
Query: 629 EAVLLGVVARTMSGIALIPITVIKLGTNQG 718
++++LG ART++G+ ++P+TV+K G
Sbjct: 431 KSIVLGATARTIAGVCMMPVTVVKTRYESG 460
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +1
Query: 328 FLAGSFSGTFSTVLFQPLDLVKTRLQ-NP 411
F+ G +G ++V+ QP D+VKTRLQ NP
Sbjct: 527 FICGIMAGAMASVVTQPADVVKTRLQMNP 555
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 322 KAFLAGSFSGTFSTVLFQPLDLVKTRLQNPNHHVMAATVNCAD 450
K FL G +G S P+D+VKTR+Q N + + N A+
Sbjct: 237 KTFLIGGVAGAASVFGNTPVDVVKTRMQLLNSRLFRSDFNPAE 279
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 560 LYFSSLHWLKGKMGKSTGDLKAIEAVLLGVVARTMSGIALIPITVIK 700
+Y + WL+G G S+ D+ A++ L+G VA S P+ V+K
Sbjct: 216 VYSNLKSWLQG--GDSSKDIGAVKTFLIGGVAGAASVFGNTPVDVVK 260
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 331 LAGSFSGTFSTVLFQPLDLVKTRLQNPN 414
+AGS SG QPLDL+K RLQ N
Sbjct: 25 IAGSVSGMLGCAAGQPLDLLKVRLQAMN 52
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 313 PVFKAFLAGSFSGTFSTVLFQPLDLVKTRLQ 405
P+ AG +G ++V PLD++KTRLQ
Sbjct: 204 PLIYCLGAGCLAGMTASVAVNPLDVIKTRLQ 234
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 328 FLAGSFSGTFSTVLFQPLDLVKTRLQN 408
F A SG +TV P+D+ KTR+QN
Sbjct: 97 FGASMISGLATTVASMPVDIAKTRIQN 123
>SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1784
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 560 LYFSSLHWLKGKMGKSTGDLKAIEAVLLGVVAR-TMSGIALIPITVIKLGTNQGVQIHQF 736
LY + L+G + D K I+ + VVA+ T S IA+ ++ IKL +
Sbjct: 387 LYIRCVALLQGYQWTFSMDYKFIKLIEADVVAKLTGSSIAISGVSAIKLDGSHSYFTGSS 446
Query: 737 EWCSEIHI 760
EW S + +
Sbjct: 447 EWASNVFL 454
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 301 TNYHPVFKAFLAGSFSGTFSTVLFQPLDLVKTRLQ 405
T+Y P FK LAG +G S PL+ VK LQ
Sbjct: 30 TSYKP-FKHLLAGGIAGAVSRTSVSPLERVKILLQ 63
>SB_45628| Best HMM Match : DUF1639 (HMM E-Value=0.19)
Length = 662
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 584 LKGKMGKSTGDLKAIEAVLLGVVARTMSGIALIPITVIKLGTNQG 718
L G + + GD+ +E+ V+AR MS +++ + ++ T+ G
Sbjct: 163 LMGAINSAQGDVSGVESATFSVIARQMSSMSVQSFSSDEMDTSDG 207
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 584 LKGKMGKSTGDLKAIEAVLLGVVARTMSGIALIPITVIKLGTNQG 718
L G + + GD+ +E+ V+AR MS +++ + ++ T+ G
Sbjct: 398 LMGAINSAQGDVSGVESATFSVIARQMSSMSVQSFSSDEMDTSDG 442
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +1
Query: 313 PVFKAFLAGSFSGTFSTVLFQPLDLVKTRL-----QNPNHHVMAATVNCADFNPG 462
P +AGS +G + PLD+V++RL Q+ + + T+ C G
Sbjct: 63 PAINKLVAGSLAGMTACACTYPLDMVRSRLAFQVAQDQGYTTITQTIRCISVKEG 117
>SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 313
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 322 KAFLAGSFSGTFSTVLFQPLDLVKTRLQ 405
K F AG F G PLD +K RLQ
Sbjct: 28 KNFFAGGFGGVCCIATGHPLDTIKVRLQ 55
>SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 331 LAGSFSGTFSTVLFQPLDLVKTRLQN 408
+AG G+ +L PLD+++TRLQ+
Sbjct: 731 VAGGLGGSTGVILTCPLDVIQTRLQS 756
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 328 FLAGSFSGTFSTVLFQPLDLVKTRLQNPNHHVMAATVNCA 447
F++ +G +T + P+D+VKTR N + + ++CA
Sbjct: 222 FVSAFGAGFVTTCVASPVDVVKTRYMNSPANTYKSGIDCA 261
>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
Length = 1724
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 561 NPTPGTHRATEGIIPRHNQRFAPDGL 484
+P PG AT GII R + + P G+
Sbjct: 839 SPIPGVSNATSGIIKREHTKAPPTGM 864
>SB_44265| Best HMM Match : DUF1032 (HMM E-Value=4e-06)
Length = 1073
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 697 YHSYWYQGNPAHGPCDNAQKNSLNSFQVSRRLPHLPFEP 581
YH ++ +PA P + L+ +VSR LP ++P
Sbjct: 693 YHQHFGDASPARSPPIESPVRYLDHAEVSRALPSCTYKP 731
>SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)
Length = 850
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +1
Query: 631 GCSFGRCRKDHERDCLDTNNC--DKTRYESGCTNTP 732
GC+ G ++ + C D + C D + CTNTP
Sbjct: 270 GCNVGYTLRNDSKTCSDIDECLDDAHLCDQRCTNTP 305
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 316 VFKAFLAGSFSGTFSTVLFQPLDLVKTRLQ 405
V K +AGS +G + ++ PLD +K RLQ
Sbjct: 38 VLKNSIAGSAAGAAANLVGFPLDTIKVRLQ 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,262,755
Number of Sequences: 59808
Number of extensions: 506357
Number of successful extensions: 1149
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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