Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0146
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   1.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   7.2  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.5  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.5  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 117 YSDYSDTI*AYI*SYFNLNVLFAIGSTISNTINLVFTPKIL 239
           Y D S  + AY  +    + L+ + S + N I L+ +PK+L
Sbjct: 119 YKDCSGIVSAYKIAIDKFDRLWVLDSGLINNIQLMCSPKLL 159


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 626 IEAVLLGVVARTMSGIALIPITVIKLGT 709
           I   +LGV  +  +G+A   IT+I LG+
Sbjct: 33  IHLQILGVSKQIETGLAFPSITLIVLGS 60


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 334 AGSFSGTFSTVLFQPLDLVKTRL 402
           +G  +G  S     PLD  +TRL
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRL 143


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 334 AGSFSGTFSTVLFQPLDLVKTRL 402
           +G  +G  S     PLD  +TRL
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRL 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,548
Number of Sequences: 438
Number of extensions: 4819
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)