Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0141
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    91   2e-19
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   8.5  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 42/71 (59%), Positives = 50/71 (70%)
 Frame = +3

Query: 294 SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF* 473
           S  Q+PLF  A+ IT+          AG + +L +DRNLNTSF+ P GGGDP+LYQHLF 
Sbjct: 184 SLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFW 243

Query: 474 FFGHPEVYILI 506
           FFGHPEVYILI
Sbjct: 244 FFGHPEVYILI 254



 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 42/83 (50%), Positives = 53/83 (63%)
 Frame = +1

Query: 1   GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 180
           GN LVPL++GAPD+A+PR+NN  F              + E G G G TVYPPLSS  +H
Sbjct: 86  GNYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSH 145

Query: 181 RGRSVDLAIFSLHLAGISSIIGA 249
            G ++DLAI SL L GISS +G+
Sbjct: 146 SGPAIDLAILSLQLTGISSTLGS 168



 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 34/73 (46%), Positives = 46/73 (63%)
 Frame = +2

Query: 509 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 688
           P FG++SHII      K  F                 +V +HH+FTVG+D+DTRAYF++A
Sbjct: 256 PAFGVVSHIIPS-LAHKPIFGKEGMLWAMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAA 314

Query: 689 TIIIAVPTGIKIF 727
           T++IA+PTGIKIF
Sbjct: 315 TMVIAIPTGIKIF 327


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 75  TPTPLPYIINFKKNCRKWCRNRMNS 149
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,245
Number of Sequences: 5004
Number of extensions: 41233
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)