Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0139
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 140 1e-33
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 138 3e-33
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 135 3e-32
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.2
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 3.5
01_05_0311 + 20740407-20740947,20741357-20741614,20743043-20743209 29 4.7
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 6.2
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 28 6.2
08_02_0567 + 18769742-18769790,18769928-18771351 28 8.2
06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385 28 8.2
02_01_0254 - 1669461-1669590,1669833-1672318 28 8.2
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 140 bits (339), Expect = 1e-33
Identities = 66/92 (71%), Positives = 74/92 (80%)
Frame = +1
Query: 244 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 423
K KD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 424 VRSSDRWKAQVIEALRRAKFKFPGRQKISYQR 519
VR + EALRRAKFKFPGRQKI + R
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFPGRQKIIHSR 169
Score = 137 bits (332), Expect = 7e-33
Identities = 60/79 (75%), Positives = 67/79 (84%)
Frame = +2
Query: 14 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 193
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 194 SSEALEAGRICCNKYLVKN 250
SSEALEA RI CNKY+ KN
Sbjct: 61 SSEALEAARIACNKYMTKN 79
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = +3
Query: 489 PRTSKDLVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 629
P K + S+KWGFTK+ R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 160 PGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 138 bits (335), Expect = 3e-33
Identities = 66/92 (71%), Positives = 72/92 (78%)
Frame = +1
Query: 244 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 423
K KD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133
Query: 424 VRSSDRWKAQVIEALRRAKFKFPGRQKISYQR 519
VR EALRRAKFKFPGRQKI R
Sbjct: 134 VRCKPNNAVHASEALRRAKFKFPGRQKIIESR 165
Score = 115 bits (277), Expect = 3e-26
Identities = 50/72 (69%), Positives = 59/72 (81%)
Frame = +2
Query: 35 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 214
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 215 GRICCNKYLVKN 250
RI CNKY+ K+
Sbjct: 64 ARIACNKYMTKS 75
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +3
Query: 489 PRTSKDLVSKKWGFTKYERDEFEKLREEGRLANDG 593
P K + S+KWGFTK+ RDE+ +L+ EGR+ DG
Sbjct: 156 PGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 135 bits (327), Expect = 3e-32
Identities = 63/90 (70%), Positives = 72/90 (80%)
Frame = +1
Query: 244 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 423
K KD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 424 VRSSDRWKAQVIEALRRAKFKFPGRQKISY 513
VR D A EALRRAKFKFPGRQ++ +
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFPGRQRVIF 474
Score = 130 bits (315), Expect = 8e-31
Identities = 56/75 (74%), Positives = 64/75 (85%)
Frame = +2
Query: 26 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 205
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 206 LEAGRICCNKYLVKN 250
LEA RI CNKY+ K+
Sbjct: 372 LEAARIACNKYMAKH 386
Score = 47.6 bits (108), Expect = 9e-06
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +3
Query: 489 PRTSKDLVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 623
P + + S KWGFT+++RDE+ KL+ EGR+ DG + HG
Sbjct: 467 PGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 416 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 324
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 137 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVK 247
T D P C +HL SD Y S E ++AG+ C L K
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQK 624
>01_05_0311 + 20740407-20740947,20741357-20741614,20743043-20743209
Length = 321
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 486 VPRTSKDLVSKKWGFTKYERDEFEKLREE 572
+P+T+KDL + FTK E D+ EE
Sbjct: 148 IPKTAKDLFERMESFTKGEEDKLRVQEEE 176
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 370 GKPQGTVARVRIGQPIMSVRSSD 438
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = -2
Query: 674 RLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKL 549
+++ +D + +LPP ++ + +V+HN + + + + LLK+
Sbjct: 685 QIFFDDRNTSLPPDTRKAAYLSVMHNVSSTNRSG-YDALLKI 725
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = +1
Query: 355 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQKIS 510
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR +++
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRLA 77
>06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385
Length = 157
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 519 SLIRDLLTSGELELGTAQSLDDLCLPPVTRAHGH 418
+L+ +LLT E+ L T + LCLPP+ H
Sbjct: 4 TLVANLLTYWEVFLVTEFGMPTLCLPPIATYWSH 37
>02_01_0254 - 1669461-1669590,1669833-1672318
Length = 871
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 683 VLIRLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLK 552
V +RL++ S PPS + F A + AA +AAL LL+
Sbjct: 24 VALRLFLHLTSAASPPSPHSTSFLARILAAAAAHDAALLPSLLR 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,152,018
Number of Sequences: 37544
Number of extensions: 518404
Number of successful extensions: 1528
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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