Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0139
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   151   6e-37
Z81475-8|CAL90887.1|  676|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81475-7|CAB03914.2|  653|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell l...    29   3.2  
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL110482-5|CAB60338.2|  704|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   5.6  
AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z93372-3|CAB07545.1|  601|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    27   9.8  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    27   9.8  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    27   9.8  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  151 bits (365), Expect = 6e-37
 Identities = 66/80 (82%), Positives = 70/80 (87%)
 Frame = +2

Query: 14  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 193
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 194 SSEALEAGRICCNKYLVKNC 253
           SSEALEA RIC NKY+VKNC
Sbjct: 61  SSEALEAARICANKYMVKNC 80



 Score =  126 bits (305), Expect = 1e-29
 Identities = 62/92 (67%), Positives = 68/92 (73%)
 Frame = +1

Query: 244 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 423
           K   KD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG  + S
Sbjct: 78  KNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFS 137

Query: 424 VRSSDRWKAQVIEALRRAKFKFPGRQKISYQR 519
           +R  +      IEA RRAKFKFPGRQ I   R
Sbjct: 138 MRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSR 169



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 24/42 (57%), Positives = 34/42 (80%)
 Frame = +3

Query: 513 SKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDAW 638
           S+KWGFTK++R+++E++R EGRL +DG  VQ + EHGPL  W
Sbjct: 168 SRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTKW 209


>Z81475-8|CAL90887.1|  676|Caenorhabditis elegans Hypothetical
           protein C24H11.8b protein.
          Length = 676

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 30/118 (25%), Positives = 46/118 (38%)
 Frame = +1

Query: 271 IRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKA 450
           +  R HP   + + ++ S     R  T  R A      T  R    + + S    D    
Sbjct: 205 LSFRYHPNAAVNVRRVQSSRSNQRYNTVRRHASLNRSRT--RSNDTKSVRSFNRYDSTNT 262

Query: 451 QVIEALRRAKFKFPGRQKISYQRSGVSQSMNVMSLRSCVKRAASLMTAALCSTARNMD 624
           Q ++  R      PGR+KIS Q    + +M  +      KR A L  +   +TA NM+
Sbjct: 263 QPVQPPRFDTMSLPGRRKISTQSRSPNGTMPRLPNFPQPKRGAHLQKS---NTAINME 317


>Z81475-7|CAB03914.2|  653|Caenorhabditis elegans Hypothetical
           protein C24H11.8a protein.
          Length = 653

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 30/118 (25%), Positives = 46/118 (38%)
 Frame = +1

Query: 271 IRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKA 450
           +  R HP   + + ++ S     R  T  R A      T  R    + + S    D    
Sbjct: 205 LSFRYHPNAAVNVRRVQSSRSNQRYNTVRRHASLNRSRT--RSNDTKSVRSFNRYDSTNT 262

Query: 451 QVIEALRRAKFKFPGRQKISYQRSGVSQSMNVMSLRSCVKRAASLMTAALCSTARNMD 624
           Q ++  R      PGR+KIS Q    + +M  +      KR A L  +   +TA NM+
Sbjct: 263 QPVQPPRFDTMSLPGRRKISTQSRSPNGTMPRLPNFPQPKRGAHLQKS---NTAINME 317


>U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell
           lineage protein 32 protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 398 FALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSR 511
           F+LDSP+ P +L  GG     + C    + SP + R R
Sbjct: 36  FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLRMR 73


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 447 LPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 325
           +P VT A   + LSN  T  ST  LA   T  +L P+S  A
Sbjct: 46  VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86


>AL110482-5|CAB60338.2|  704|Caenorhabditis elegans Hypothetical
           protein Y39G8B.5 protein.
          Length = 704

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/84 (26%), Positives = 39/84 (46%)
 Frame = -2

Query: 671 LYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILCETPLL*YEIF*RP 492
           L +ED+ L   P + R +   + ++ A I     +TQ  +L+   L     +  +IF  P
Sbjct: 533 LRLEDMDL---PGIRREIESYLFYDKATILSTQKYTQ--ELVELCLKRRNTVMKQIFNSP 587

Query: 491 GNLNLARRRASMTCAFHLSLERTD 420
             +N ++   +M  A  LS  R+D
Sbjct: 588 DGINKSKLNTAMNLAASLSQLRSD 611


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 358 RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 504
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 377 GLPNAPRIPVWSLSAPA 327
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 74  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 220
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical
           protein C29F9.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 528 FTKYERDEFEKLREEGRLANDGCIVQYR 611
           F K +RDEFE++R +  LA +  I  Y+
Sbjct: 136 FFKSQRDEFERIRYDPELAEEHFIEAYK 163


>Z93372-3|CAB07545.1|  601|Caenorhabditis elegans Hypothetical
           protein BE10.3 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 471 PCQVQVPRTSKDLVSKKWGFTKYERDEFEKLRE 569
           PCQ+QV R   +L+  KW   K  R EF +L E
Sbjct: 261 PCQLQVMRQIVELIVVKWN-VKNLRIEFGELPE 292


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 136 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 35
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 136 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 35
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 136 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 35
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,835,715
Number of Sequences: 27780
Number of extensions: 406092
Number of successful extensions: 1168
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)