Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0138
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    27   2.3  
SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.0  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   5.2  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   5.2  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    25   9.1  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   9.1  

>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 253 HGGHDGHVTDEHWARGHNGRVSHDHGGHQGHVTNV 149
           +GGH  H    H+  GH     H H G  GH+ ++
Sbjct: 739 NGGHHHH-HHHHYITGHVYGGYHKHSGSGGHLVDM 772


>SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 79

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/67 (23%), Positives = 29/67 (43%)
 Frame = -2

Query: 238 GHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYY 59
           G+V   H A  HN  VS +    +       +   H G V  +H+  T ++   Y+A  +
Sbjct: 5   GNVIGGHKAALHNPNVSEETKQREKE-----YLEEHEGEVGEEHQKNTGNVRGGYKAAMH 59

Query: 58  DGRISND 38
           +  +S +
Sbjct: 60  NPNVSGE 66


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 126 AGSATI-TGATLGPSATITGLGTMMAGSAMITGETAGFSS 10
           AG  T+  G  LG     T LGT++  + MIT    GF +
Sbjct: 199 AGLGTLFAGLGLGTMIGATYLGTLITSAPMITALFGGFGA 238


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
            Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 112  DHRGYTRSLGNNYRARYYDGRISNDHGRNSRLFFNI 5
            D+R Y    G  +  RYYD R++   G      +N+
Sbjct: 895  DNRHYQILQGFTFLYRYYDLRVNEGLGEKQEALYNL 930


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -3

Query: 453 EDVIWLFFYILEMISND---NWFHSDWL 379
           E +IWL FY+   I+++   NW    WL
Sbjct: 256 EQLIWLSFYLFGAIASESLLNWTIFAWL 283


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/51 (23%), Positives = 20/51 (39%)
 Frame = -2

Query: 187  HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDH 35
            +  GGH+G+          NG  + +H    R  G  Y+   Y+    N +
Sbjct: 940  NSRGGHEGYGGRSRGGGYSNGPPAGNHYSSNRGKGYGYQRESYNNNNRNGY 990


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,908
Number of Sequences: 5004
Number of extensions: 23309
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)