Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0138
(524 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 27 0.16
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 27 0.16
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 27 0.16
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 2.5
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 23 2.5
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 22 3.3
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 22 4.4
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 21 5.8
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 21 7.7
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 26.6 bits (56), Expect = 0.16
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 91 SLGNNYRARYYDGRISNDHGRNSRLFFNI 5
SL NNY Y+ +N + N +L++NI
Sbjct: 84 SLSNNYNYSNYNNYNNNYNNYNKKLYYNI 112
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 26.6 bits (56), Expect = 0.16
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 291 HWARGHNGGVSHATGDTM 238
HW GHNGG S TG T+
Sbjct: 1423 HWKSGHNGGAS-LTGYTL 1439
Score = 26.2 bits (55), Expect = 0.21
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 151 VHWARGHNGGVSHDHRGYT 95
+HW GHNGG S GYT
Sbjct: 1422 LHWKSGHNGGAS--LTGYT 1438
Score = 22.2 bits (45), Expect = 3.3
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -2
Query: 220 HWARGHNGRVS 188
HW GHNG S
Sbjct: 1423 HWKSGHNGGAS 1433
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 26.6 bits (56), Expect = 0.16
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 291 HWARGHNGGVSHATGDTM 238
HW GHNGG S TG T+
Sbjct: 1419 HWKSGHNGGAS-LTGYTL 1435
Score = 26.2 bits (55), Expect = 0.21
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 151 VHWARGHNGGVSHDHRGYT 95
+HW GHNGG S GYT
Sbjct: 1418 LHWKSGHNGGAS--LTGYT 1434
Score = 22.2 bits (45), Expect = 3.3
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -2
Query: 220 HWARGHNGRVS 188
HW GHNG S
Sbjct: 1419 HWKSGHNGGAS 1429
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.6 bits (46), Expect = 2.5
Identities = 7/26 (26%), Positives = 15/26 (57%)
Frame = -2
Query: 133 HNGGVSHDHRGYTRSLGNNYRARYYD 56
+N ++++ Y + NNY+ YY+
Sbjct: 330 NNNNYNNNYNNYNNNNYNNYKKLYYN 355
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 22.6 bits (46), Expect = 2.5
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -3
Query: 519 LITILMTLVNLVNYISM*NPHVEDVIWLFFYILEMISNDNWFHSDWLDGTDDDRL 355
L++ L N + + M + HV + L Y+L+ S F DGT++D L
Sbjct: 557 LVSFLQPFSNTLWILVMVSVHV---VALVLYLLDRFSPFGRFKLANTDGTEEDAL 608
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.3
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -2
Query: 115 HDHRGYTRSLGNNYRARYYD 56
H++ Y + NNY+ YY+
Sbjct: 91 HNNNNYNNNNYNNYKKLYYN 110
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.8 bits (44), Expect = 4.4
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -2
Query: 115 HDHRGYTRSLGNNYRARYYD 56
+++ Y + NNY+ YY+
Sbjct: 335 NNYNNYNNNYNNNYKKLYYN 354
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 5.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -2
Query: 118 SHDHRGYTRSLGNNYRARYYD 56
++++ Y + NNYR YY+
Sbjct: 90 NYNNNNYKKLYCNNYRKLYYN 110
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 21.0 bits (42), Expect = 7.7
Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Frame = -2
Query: 223 EHWARGHNGR-VSHDHG 176
E+ +RGH+G+ SH HG
Sbjct: 391 ENNSRGHSGQSSSHHHG 407
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,172
Number of Sequences: 438
Number of extensions: 1832
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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