Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0138
(524 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05510.1 68415.m00583 glycine-rich protein 36 0.013
At3g63100.1 68416.m07087 glycine-rich protein 36 0.022
At2g05440.2 68415.m00575 glycine-rich protein 34 0.067
At2g05440.1 68415.m00574 glycine-rich protein 34 0.067
At1g27090.1 68414.m03302 glycine-rich protein 31 0.47
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse... 31 0.63
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 29 1.4
At2g05530.1 68415.m00585 glycine-rich protein 29 2.5
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 2.5
At5g05190.1 68418.m00553 expressed protein similar to unknown pr... 28 3.3
At3g50970.1 68416.m05581 dehydrin xero2 (XERO2) / low-temperatur... 28 3.3
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin... 28 4.4
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin... 28 4.4
At2g04620.1 68415.m00470 cation efflux family protein potential ... 27 5.8
At2g43970.2 68415.m05468 La domain-containing protein contains P... 27 7.7
At2g43970.1 68415.m05467 La domain-containing protein contains P... 27 7.7
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 27 7.7
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 36.3 bits (80), Expect = 0.013
Identities = 23/60 (38%), Positives = 26/60 (43%)
Frame = -2
Query: 253 HGGHDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 74
HGGH G H GH G H HGGH G H G+ GG H G+ G +Y
Sbjct: 44 HGGHGG-----HGGGGHYGGGGHGHGGHNG--GGGHGLDGYGGG----HGGHYGGGGGHY 92
Score = 33.5 bits (73), Expect = 0.089
Identities = 21/53 (39%), Positives = 23/53 (43%)
Frame = -2
Query: 232 VTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 74
V E + GH G H GGH G H GHNGG H GY G +Y
Sbjct: 38 VQPEGYHGGHGG---HGGGGHYG--GGGHGHGGHNGGGGHGLDGYGGGHGGHY 85
Score = 31.9 bits (69), Expect = 0.27
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = -2
Query: 286 G*GPQWRGQPRHGGHDG---HVTDEHWAR--GHNGRVSHDHGGHQGHVTNVHW-ARGHNG 125
G G G HGGH+G H D + GH G +GG GH H+ GH+G
Sbjct: 52 GGGHYGGGGHGHGGHNGGGGHGLDGYGGGHGGHYGGGGGHYGGGGGHGGGGHYGGGGHHG 111
Query: 124 GVSH 113
G H
Sbjct: 112 GGGH 115
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 35.5 bits (78), Expect = 0.022
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Frame = -2
Query: 253 HGGHDGHVTDEHWA-RGHNGRVSHDHG---GHQGHVTNVHWARG---HNGGVSHDHRGYT 95
HG GH EH RGH H HG GH+ H + R H G H HRG+
Sbjct: 75 HGHGYGHGHREHGHDRGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHR 134
Query: 94 RSLGNNY 74
R G +
Sbjct: 135 RGRGRGH 141
Score = 33.1 bits (72), Expect = 0.12
Identities = 25/77 (32%), Positives = 31/77 (40%)
Frame = -2
Query: 250 GGHDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYR 71
GG DG V D R G HD+G H + H GH G H G+ R G+
Sbjct: 42 GGVDGGV-DRGCCRHCCGGRRHDYGRDCCHCDHCH---GHGYGHGHREHGHDRGHGHGRG 97
Query: 70 ARYYDGRISNDHGRNSR 20
+ G HGR+ R
Sbjct: 98 HGHGHGHGHRRHGRDHR 114
Score = 32.3 bits (70), Expect = 0.21
Identities = 21/59 (35%), Positives = 25/59 (42%)
Frame = -2
Query: 253 HGGHDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNN 77
HG GH H G + R D G H+GH H RGH G H G+ R G +
Sbjct: 98 HGHGHGH---GHRRHGRDHRHGRDRGHHRGH--GHHHHRGHRRGRGRGH-GHGRGRGGH 150
Score = 28.7 bits (61), Expect = 2.5
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Frame = -2
Query: 268 RGQPRH--GG--HDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRG 101
RG RH GG HD H H H H H GH RGH G H HR
Sbjct: 50 RGCCRHCCGGRRHDYGRDCCHCDHCHGHGYGHGHREH-GHDRGHGHGRGHGHGHGHGHRR 108
Query: 100 YTRSLGNNYRARYYDGRISNDHGRNSR 20
+ R + ++ G + H R R
Sbjct: 109 HGRDHRHGRDRGHHRGH-GHHHHRGHR 134
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = -2
Query: 265 GQPRHGGHDGHVTDEHWARGHNGRVSHDHGGH-QGHVTNVHWARGHNGGVSHDHRGYTRS 89
G RHG H D RGH H H GH +G RG G V + +
Sbjct: 105 GHRRHGRDHRHGRDRGHHRGHG---HHHHRGHRRGRGRGHGHGRGRGGHVQEAGERWEQE 161
Query: 88 LG 83
+G
Sbjct: 162 VG 163
>At2g05440.2 68415.m00575 glycine-rich protein
Length = 154
Score = 33.9 bits (74), Expect = 0.067
Identities = 19/46 (41%), Positives = 20/46 (43%)
Frame = -2
Query: 250 GGHDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 113
GGH GH GH G H HGGH G H G+ GG H
Sbjct: 45 GGHGGH-------GGHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81
Score = 32.7 bits (71), Expect = 0.16
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -2
Query: 253 HGGHDGHVTDE-HWARGHNGRVSHDHGGHQGHVTNVHWARGHNGG 122
HGGH GH H GHNG H G+ G + GH GG
Sbjct: 47 HGGHGGHGGGGGHGHGGHNGGGGHGLDGYGGGGGHYGGGGGHYGG 91
Score = 32.3 bits (70), Expect = 0.21
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = -2
Query: 232 VTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 98
V E + GH G H GG GH GHNGG H GY
Sbjct: 38 VQPEGYGGGHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75
>At2g05440.1 68415.m00574 glycine-rich protein
Length = 127
Score = 33.9 bits (74), Expect = 0.067
Identities = 19/46 (41%), Positives = 20/46 (43%)
Frame = -2
Query: 250 GGHDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 113
GGH GH GH G H HGGH G H G+ GG H
Sbjct: 45 GGHGGH-------GGHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81
Score = 32.7 bits (71), Expect = 0.16
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -2
Query: 253 HGGHDGHVTDE-HWARGHNGRVSHDHGGHQGHVTNVHWARGHNGG 122
HGGH GH H GHNG H G+ G + GH GG
Sbjct: 47 HGGHGGHGGGGGHGHGGHNGGGGHGLDGYGGGGGHYGGGGGHYGG 91
Score = 32.3 bits (70), Expect = 0.21
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = -2
Query: 232 VTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 98
V E + GH G H GG GH GHNGG H GY
Sbjct: 38 VQPEGYGGGHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75
>At1g27090.1 68414.m03302 glycine-rich protein
Length = 420
Score = 31.1 bits (67), Expect = 0.47
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = -2
Query: 280 GPQWRGQPRHGGHDGHVTDEHWARG----HNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 113
G Q +G + GG + D + RG GR GG G N RG GG +
Sbjct: 314 GQQEQGYTQVGGAENAKRD-YVPRGSYQNQRGRRGARRGG--GGYQNGRGGRGGGGGYQN 370
Query: 112 D-HRGYTRSLGNNYRARYYDGR 50
+ Y +S GN Y+ YY+ R
Sbjct: 371 GRYESYDQSGGNGYQRNYYNNR 392
>At1g67870.1 68414.m07750 glycine-rich protein contains
non-consensus GG donor splice site at exon2; modeled to
est match.
Length = 279
Score = 30.7 bits (66), Expect = 0.63
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -2
Query: 265 GQPRHGGHDGHVTDEHWARGHNGRVSHDH-GGHQGHVTNVHWARGHNGGVSHDHRG 101
G GGH D H + H GR H GGH+ +H + H GG H+G
Sbjct: 191 GMEHQGGHGMQHQDMHGMQ-HQGRHGMQHQGGHEMQHQGMHGMQ-HQGGHRIQHQG 244
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/77 (23%), Positives = 25/77 (32%)
Frame = -2
Query: 265 GQPRHGGHDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSL 86
G GGH H + G GGH +H + H GG +H+G
Sbjct: 143 GMQHQGGHGMQHQGMHGMQHQGGHGMQHQGGHGMQHQGMHGMQ-HQGGHGMEHQGGHGMQ 201
Query: 85 GNNYRARYYDGRISNDH 35
+ + GR H
Sbjct: 202 HQDMHGMQHQGRHGMQH 218
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = -2
Query: 262 QPRHGGHDGHVTDEHWAR-GHNGRVSHDHGGHQGHVTNVH-WARGHNGGVSHDHRG 101
QP+ GH D W GHN ++ H Q +N H + G +H +G
Sbjct: 1154 QPKRSS--GHSRDRQWLNNGHNSSFNNSHNNRQWPYSNSHGYDHGSGSYAAHPPKG 1207
>At2g05530.1 68415.m00585 glycine-rich protein
Length = 115
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -2
Query: 253 HGGHDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTR 92
HGG+ G+ + G+NG H+ GG+ G G+NGG GY R
Sbjct: 45 HGGNGGY----NGGGGYNGGGGHNGGGYNG-------GGGYNGGGHGGRHGYCR 87
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -2
Query: 250 GGHDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVH-WARGHNGGVS 116
G H H D H H+ HDH H GH + H H+ GVS
Sbjct: 309 GDHHDHDHDHHHDHNHD----HDHHHHDGHDHHHHSHDHTHDPGVS 350
>At5g05190.1 68418.m00553 expressed protein similar to unknown
protein (emb|CAB88044.1)
Length = 615
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = -2
Query: 223 EHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRIS 44
E + RG SHD ++ + GG++HD Y R + RIS
Sbjct: 354 ESYTRGSPSHPSHDEFDRYPRAHSLQMP-SYAGGMNHDFVDYMYHNNPRARGQGQGSRIS 412
Query: 43 NDHGRN 26
+ GRN
Sbjct: 413 GEMGRN 418
>At3g50970.1 68416.m05581 dehydrin xero2 (XERO2) /
low-temperature-induced protein LTI30 (LTI30) identical
to dehydrin Xero 2 (Low-temperature-induced protein
LTI30) [Arabidopsis thaliana] SWISS-PROT:P42758
Length = 193
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = -2
Query: 259 PRHGGHDGHVTDEHWARGHNGRVSHDHGGHQG-HVTNVHWARG--HNGGVSHDHRGYTRS 89
P H G G H +G +V GH G H T + G + GGV H+ + T
Sbjct: 51 PGHHGATGTGGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTYGTTNTGGVHHEKKSVTEK 110
Query: 88 L 86
+
Sbjct: 111 V 111
>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = -2
Query: 238 GHVTDEHWARGHNGRVSHDHGGHQGHVTNV--HWARGHNGGVSHDH 107
GH D + GH HDH H VT H H G SH H
Sbjct: 181 GH--DHGHSHGHGHGHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGH 224
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -2
Query: 253 HG-GHDGHVTDEHWAR--GHNGRVSHDHGGHQGHVTNVHWARG 134
HG GHD H H H+ H+HG GH + H A G
Sbjct: 192 HGHGHDHH-NHSHGVTVTTHHHHHDHEHGHSHGHGEDKHHAHG 233
>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = -2
Query: 238 GHVTDEHWARGHNGRVSHDHGGHQGHVTNV--HWARGHNGGVSHDH 107
GH D + GH HDH H VT H H G SH H
Sbjct: 181 GH--DHGHSHGHGHGHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGH 224
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -2
Query: 253 HG-GHDGHVTDEHWAR--GHNGRVSHDHGGHQGHVTNVHWARG 134
HG GHD H H H+ H+HG GH + H A G
Sbjct: 192 HGHGHDHH-NHSHGVTVTTHHHHHDHEHGHSHGHGEDKHHAHG 233
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/78 (23%), Positives = 31/78 (39%)
Frame = -2
Query: 268 RGQPRHGGHDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRS 89
+ + H D H +EH H SH H H H + H + +H+H +S
Sbjct: 566 KNEEHHQHSDSHKHEEH----HQHSDSHKHEEHHEHDHHHHSHSHKHEECNHNHDHEHQS 621
Query: 88 LGNNYRARYYDGRISNDH 35
+N+ ++ +DH
Sbjct: 622 HSHNHEECNHNHDHHSDH 639
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -2
Query: 268 RGQPRHGGHDGHVTDEHWARGHNGRVSHDHGGH 170
RGQP + + + HNGR +H H H
Sbjct: 447 RGQPHQNQNQNNNHSHNQNHNHNGRGNHHHHHH 479
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -2
Query: 268 RGQPRHGGHDGHVTDEHWARGHNGRVSHDHGGH 170
RGQP + + + HNGR +H H H
Sbjct: 463 RGQPHQNQNQNNNHSHNQNHNHNGRGNHHHHHH 495
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.1 bits (57), Expect = 7.7
Identities = 24/71 (33%), Positives = 30/71 (42%)
Frame = -2
Query: 274 QWRGQPRHGGHDGHVTDEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYT 95
QW GQ GG ++++ RG+NG+ H GG H RG G H H
Sbjct: 970 QWHGQ---GG-----SEQNNPRGYNGQHHHQQGGD-------HDRRGRGRGSHHHH---- 1010
Query: 94 RSLGNNYRARY 62
G N R RY
Sbjct: 1011 -DQGGNPRHRY 1020
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,173,999
Number of Sequences: 28952
Number of extensions: 138845
Number of successful extensions: 541
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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