Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0136
         (707 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CF322 Cluster: hypothetical protein TTHERM_0006...    36   0.74 
UniRef50_A5TW82 Cluster: Putative uncharacterized protein; n=3; ...    33   9.1  

>UniRef50_UPI00006CF322 Cluster: hypothetical protein
           TTHERM_00068060; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00068060 - Tetrahymena
           thermophila SB210
          Length = 822

 Score = 36.3 bits (80), Expect = 0.74
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
 Frame = +3

Query: 342 NFMRIILNIS*LFLNALKNQKYHFFFVKHQFSNQILVFIVR*FNYYTGDTYDMLALRNLQ 521
           NF R +  I    LN+ ++QKY F +   Q  N   +      NY   +TYD+L +    
Sbjct: 196 NFERFVALIP--ILNS-ESQKYEFGYFNQQNKNVTNILTDPVNNYLFFETYDLLLIYKYY 252

Query: 522 FSFKQSFHI-------KTTHSRFSRHRTECSNGAVFS-NNVLLLNY 635
           F  K SF I       +   S+ +  +    N  V+S NN L+++Y
Sbjct: 253 FFSKSSFQIISQTFIAQFQFSKITNIKCNHENNIVYSTNNTLIISY 298


>UniRef50_A5TW82 Cluster: Putative uncharacterized protein; n=3;
           Fusobacterium nucleatum|Rep: Putative uncharacterized
           protein - Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953
          Length = 618

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
 Frame = +3

Query: 402 KYHFFFVKHQFSNQILVFIVR*FNYYTGDTYDMLALRNLQFSFKQSFHIKTTHSRFSRHR 581
           KY    V+H+  ++I +F ++ FN Y   +Y+++ L+N  F   ++  +K   S+    R
Sbjct: 227 KYIRNIVQHKM-DEIKIFDIKYFNIYDLISYNLINLKN--FKLYETSGLKKDWSQIKEER 283

Query: 582 TECSNGAVFSN-----NVLLLNYR 638
            E  + A FSN     N+LL+ ++
Sbjct: 284 GENFSLADFSNLIGTPNILLIGFK 307


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,491,878
Number of Sequences: 1657284
Number of extensions: 9941153
Number of successful extensions: 15672
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15671
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)