Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0136
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    29   0.86 
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   6.1  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 484 VIHTTCWR*EIFNLVLNNLSTSKQLTVGSLDIVQSVQMEQYFQI 615
           V+ +  W  E+  L  + L+   Q+TVGSLD+  S  ++Q  ++
Sbjct: 304 VMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEV 347


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 480 TGDTYDMLALRNLQFSFKQSFHIKTTHSRFSRHRTECSNGAVFSNNV 620
           T DT   + +RNL  S +  F     H +  R   + S G +FS  V
Sbjct: 818 TLDTVLSVQVRNLLSSLRMQFPSMALHPQIVRQGLDGSEGEIFSTLV 864


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,284
Number of Sequences: 5004
Number of extensions: 47862
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)