Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0136
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0730 + 22614601-22614775,22615073-22615380                       32   0.51 
12_02_0733 + 22629187-22629277,22630144-22630445                       28   8.4  

>12_02_0730 + 22614601-22614775,22615073-22615380
          Length = 160

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = -3

Query: 345 SCLAEVTVHYKLLKIKTIFP*RQLLSLNKYLGMLK 241
           SCLA++ V Y+L    ++ P ++ L L+ Y GMLK
Sbjct: 112 SCLAKINVEYELEDGGSLSPEKEKLILDGYFGMLK 146


>12_02_0733 + 22629187-22629277,22630144-22630445
          Length = 130

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 345 SCLAEVTVHYKLLKIKTIFP*RQLLSLNKYLGMLK 241
           SC+A++ V Y+L    ++ P ++   ++ Y GMLK
Sbjct: 82  SCVAKLKVEYELADGSSLSPEQEKTMVDGYFGMLK 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,562,230
Number of Sequences: 37544
Number of extensions: 221009
Number of successful extensions: 296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)