Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0135
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)                     30   2.3  
SB_33733| Best HMM Match : CYTH (HMM E-Value=2.1e-05)                  29   3.0  
SB_38000| Best HMM Match : fn3 (HMM E-Value=0.0095)                    29   3.0  
SB_56319| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_5845| Best HMM Match : Ribosomal_S27 (HMM E-Value=8.3)              28   7.0  
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_3187| Best HMM Match : WD40 (HMM E-Value=2.2e-08)                   28   7.0  
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   9.2  

>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 366

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 313 HPQFSEENYDKDVSIVRVTHAIHF 384
           HP +S ++YD D++++R+   + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222


>SB_33733| Best HMM Match : CYTH (HMM E-Value=2.1e-05)
          Length = 230

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = -2

Query: 582 QSRRDHDPYTGSCSFLCWSQ*VRAWEVAVRCTATL--NGSSPSEQINKNTLGYYDTLLDN 409
           Q  R   PY  SCSFL   +  + +++ VR   TL  NG   +E+     + YYD L DN
Sbjct: 37  QYERFRSPYQMSCSFL---EIEKKFQIPVRFEETLLSNGGKLTERREFQDV-YYD-LPDN 91

Query: 408 S-TLLDIW 388
           S TL  +W
Sbjct: 92  SLTLKGLW 99


>SB_38000| Best HMM Match : fn3 (HMM E-Value=0.0095)
          Length = 433

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 149 WFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIVDLPVVVSQVKYL 292
           +F   A I++ +Y Y  + +  H  FY+  +R+IIV  PV   +++ +
Sbjct: 148 YFDNVALIIVYHYPYYESFSLLHS-FYENGFRKIIVCGPVANDKIEVM 194


>SB_56319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +1

Query: 217 WRILRS---CIPSHYRGSSRRSEPGE 285
           WRILR+   C   HYR + R  EPGE
Sbjct: 99  WRILRTKTTCPVRHYRFNRRVQEPGE 124


>SB_5845| Best HMM Match : Ribosomal_S27 (HMM E-Value=8.3)
          Length = 265

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +1

Query: 217 WRILRS---CIPSHYRGSSRRSEPGE 285
           WRILR+   C   HYR + R  EPGE
Sbjct: 63  WRILRTKTKCPVRHYRFNRRVQEPGE 88


>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 498  RQPPKLELIVTNKENCRNQYKDHDRVVTDHKFCAGLVRDGGRDYDNTDLG 647
            R P +  L + + ENCR +Y D   V +    CAG  R       N D G
Sbjct: 906  RHPQQAMLPIASHENCRRKYGD---VSSTAHLCAGEARSDAAGGCNGDSG 952


>SB_3187| Best HMM Match : WD40 (HMM E-Value=2.2e-08)
          Length = 1259

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 590  FVISHDAIMILILVPAVFFVGHNEFELGRLP 498
            F +SHDA+++   +  VFF   N  +L +LP
Sbjct: 1116 FDVSHDAVLLGCNLGIVFFYDRNNNKLSKLP 1146


>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 898

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/61 (22%), Positives = 24/61 (39%)
 Frame = +1

Query: 313 HPQFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSA 492
           H QFS  +   D++++++   +                         + GWG TV GGSA
Sbjct: 110 HEQFSMRHLKNDIALLQLHEPVKASDKVNTVCLPSSGSRAQAGARCYITGWGRTVGGGSA 169

Query: 493 S 495
           +
Sbjct: 170 A 170


>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 473

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 107 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 229
           +LV +E + P  N+W ++    +LT   Y STA    G+ Y
Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,938,437
Number of Sequences: 59808
Number of extensions: 620082
Number of successful extensions: 1506
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1506
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)