Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0135
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    31   0.66 
Z82060-2|CAB04882.1|  421|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    30   1.5  
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z68333-2|CAA92722.1|  149|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z98866-11|CAB11564.2|  335|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U62896-1|AAB17868.1|  335|Caenorhabditis elegans PIE-1 protein.        28   8.1  
U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U61954-2|ABS19469.1|  957|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U61954-1|AAK29810.1|  955|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 348 CEHRTSNTCHPLRPKYPAGCYYPTRCRNTPGYFC 449
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>Z82060-2|CAB04882.1|  421|Caenorhabditis elegans Hypothetical
           protein T27F6.2 protein.
          Length = 421

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 22/86 (25%), Positives = 33/86 (38%)
 Frame = +3

Query: 396 PAGCYYPTRCRNTPGYFC*SARMGNYRSRWQCI*RQPPKLELIVTNKENCRNQYKDHDRV 575
           PAG ++ T C N PGY+    + G      QC    P  +     N  NC       D +
Sbjct: 266 PAGFWFSTNC-NNPGYYICKRQAG-----VQCSAAPPATVTPSPANPSNCNAGRLMSDGI 319

Query: 576 VTDHKFCAGLVRDGGRDYDNTDLGAL 653
           +T   F      +    Y  + LG++
Sbjct: 320 ITSPNFPQNYFNNANCAYQISTLGSM 345


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 372 CHPLRPKYPAGCYYPTRCRNTPG 440
           C P+RPK P G   P  CR  PG
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPG 124


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 348  CEHRTS--NT-CHPLRPKYPAGCYYPTRCRNTPGY 443
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +3

Query: 126 YSYPS*INGSNSALVLFSPTTTTFQLL 206
           YSYPS I   +S +V+ + TTTTF LL
Sbjct: 75  YSYPSPIVLEHSFVVMTTTTTTTFSLL 101


>Z68333-2|CAA92722.1|  149|Caenorhabditis elegans Hypothetical
           protein C05C12.5 protein.
          Length = 149

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 524 NEFELGRLPSDALPP*TVVPHPSRSTK 444
           +E  +G  PSD+LP  T+VP PS  ++
Sbjct: 33  HEDTVGAKPSDSLPDRTIVPSPSSQSE 59


>Z98866-11|CAB11564.2|  335|Caenorhabditis elegans Hypothetical
           protein Y49E10.14 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = -2

Query: 687 DTMPTNAFWKKAGHPSQYYRSHGHHPGPNRRRICDQSRRDHDPYTGSCSFL 535
           DT    +    + H  +  R   +H   NRR+IC    R +  Y   C F+
Sbjct: 157 DTTINRSSSSASKHHDENRRPSNNHGSSNRRQICHNFERGNCRYGPRCRFI 207


>Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical
           protein T20B3.13 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 489 CI*RQPPKLELIVTNKENCRNQYKDHDRVVTD 584
           C  + P   EL  T  +NC N YK+H  +  D
Sbjct: 257 CYKQLPFVCELPTTTSDNCTNNYKNHCYIQVD 288


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -2

Query: 714  ASLELLFPKDTMPTNAFWKKA--GHPSQYYRSHGHHPGPNRRRICDQSRRD 568
            A+ +L   K+T   N F+     GH  QY   +G+ P        ++ RRD
Sbjct: 2533 ANSKLSVDKNTFFYNNFYDNLALGHGQQYLEMYGYQPAKENNEFFNRPRRD 2583


>U62896-1|AAB17868.1|  335|Caenorhabditis elegans PIE-1 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = -2

Query: 687 DTMPTNAFWKKAGHPSQYYRSHGHHPGPNRRRICDQSRRDHDPYTGSCSFL 535
           DT    +    + H  +  R   +H   NRR+IC    R +  Y   C F+
Sbjct: 157 DTTINRSSSSASKHHDENRRPSNNHGSSNRRQICHNFERGNCRYGPRCRFI 207


>U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical
           protein F41H10.6a protein.
          Length = 863

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 145 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYRGSSRRSEPGEI 288
           S+V  +R  W C    P   +  L  W I+ + +  +Y  ++RR++ GEI
Sbjct: 355 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 404


>U61954-2|ABS19469.1|  957|Caenorhabditis elegans Hypothetical
           protein F41H10.6c protein.
          Length = 957

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 145 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYRGSSRRSEPGEI 288
           S+V  +R  W C    P   +  L  W I+ + +  +Y  ++RR++ GEI
Sbjct: 357 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 406


>U61954-1|AAK29810.1|  955|Caenorhabditis elegans Hypothetical
           protein F41H10.6b protein.
          Length = 955

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 145 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYRGSSRRSEPGEI 288
           S+V  +R  W C    P   +  L  W I+ + +  +Y  ++RR++ GEI
Sbjct: 355 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,810,930
Number of Sequences: 27780
Number of extensions: 446599
Number of successful extensions: 1149
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)