Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0134
         (634 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   4.9  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.9  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   6.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.6  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 2   AGVPLVVESXDWQHGVF 52
           A  P+  E  DW +G+F
Sbjct: 90  ANPPISTEHCDWLYGIF 106


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -3

Query: 338 SAWQGSXXQRRKIQSKTREFSSETGPEELPCSSLRNQLTWKILGMFRPGCG 186
           S  +GS      +Q   ++ ++  GP   P  SL + L   + GM  P  G
Sbjct: 50  SVGEGSFYLPMNMQGFVKQQTAPHGPPYAPHPSLSSGLGGGLSGMPMPALG 100


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 587 IGVGSGKDSTP 619
           +GVGSG++S P
Sbjct: 25  VGVGSGRNSAP 35


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 384  KPKRCRHERAVQHT*RLLAAGGELPILHHNKD 479
            KPK      AV  +  ++ AG ++P+L  N D
Sbjct: 1552 KPKGYLLSAAVSPSKTVIDAGYDVPVLAQNLD 1583


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,222
Number of Sequences: 336
Number of extensions: 2734
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)