Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0134
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    28   1.3  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    27   1.7  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    26   3.9  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    26   5.2  
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ...    25   6.9  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   6.9  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   9.1  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    25   9.1  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   9.1  

>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -3

Query: 413 SSFMSTALRFSVFRA--PALGMYPSGVSAWQGSXXQRRKIQSKTREFSSETGPEELPCSS 240
           +S M      +VFRA  P L  +  G S W  S  ++ K    TRE   E GPE +   S
Sbjct: 659 TSIMPVGSSINVFRASNPLLDAW-KGASEW--SVTEKFKAAKVTREEYLEKGPEYIKEHS 715

Query: 239 LRN 231
           L N
Sbjct: 716 LGN 718


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/76 (26%), Positives = 34/76 (44%)
 Frame = -3

Query: 422 MLNSSFMSTALRFSVFRAPALGMYPSGVSAWQGSXXQRRKIQSKTREFSSETGPEELPCS 243
           M+ S    +A +F  +   A G+ P+G     G      K++ + R+F  E G EE+P +
Sbjct: 195 MITSRSWESA-KFKSYNFAAEGIPPAG-----GCLHPLMKVREEFRKFFFELGFEEMPTN 248

Query: 242 SLRNQLTWKILGMFRP 195
           +      W    +F P
Sbjct: 249 NFVESGFWNFDALFVP 264


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 330 PRRDSTGVHTESRCSEYGKPKRCRHE-RAVQH 422
           P+R STG+H  S  + +  P R  H+  A+ H
Sbjct: 264 PKRQSTGLHRRSLTNYFKFPHRNAHQHNAIAH 295


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 257 PLARFRTRTLGS*TGSCVAATXSPAT---PRLHWG 352
           PL  F  +TLG+  G  + A+ +PA     +++WG
Sbjct: 129 PLVPFAVKTLGTAAGVMITASHNPAAYNGYKVYWG 163


>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
           Atp23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 185

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 322 EPCHAETPLGYIPRAGALNTEN 387
           +PC A++  GYIP  G +  EN
Sbjct: 51  QPCDAQSTGGYIPGKGIVLCEN 72


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +1

Query: 223 VNWFRKDEQGNSSGPVSDENSRVLDWILRRCXXEPCHAETPL 348
           +++ +   +  S     +  SR+L+  LR+C   PC    P+
Sbjct: 85  LSYAKHPRKAKSDAEFLNFRSRMLELFLRQCLLHPCIRSNPI 126


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 383 SVFRAPALGMYPSGVSAWQG-SXXQRRKIQSKTREFSSETGPE 258
           S++ A     Y S V   Q  S    +K+Q+K  E  SET PE
Sbjct: 81  SIYSAAQENAYRSSVKLIQEYSEKVHKKLQAKLLENPSETSPE 123


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 400 RQRLGFPYSEHRLSVCTPVESRRGR 326
           R R GFP  E  LS+     S RGR
Sbjct: 81  RGRYGFPTGEKMLSLYKATSSERGR 105


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +1

Query: 385 NLSAVDMNELFSIPKDFWLQEVSYRFFTTTRTLPSSDVKQSCAAG*ESSLIQS 543
           N+S ++  E+F I  ++W + V+ + +   + +P S++         +SLI S
Sbjct: 344 NISRINEREIFKICLEYWSKLVA-QLYEEMQQIPMSEMNPLLNLSSPTSLISS 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,573
Number of Sequences: 5004
Number of extensions: 48827
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)