Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0134
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767           31   1.0  
09_06_0238 - 21791139-21791264,21791862-21791948,21792713-217927...    28   7.1  
03_01_0264 - 2043334-2043344,2043441-2043801,2044666-2044974           28   7.1  
08_02_1380 - 26547273-26547409,26548038-26548097,26549347-26549689     27   9.4  
04_04_1527 - 34167673-34168245                                         27   9.4  
01_06_1668 + 38998348-38998434,38999234-38999300,38999377-389994...    27   9.4  

>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
          Length = 1041

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -2

Query: 465  EESVTHLLQPKVFRYAEQLVHVDSA*VFRIQSTGSRYVPQWSLGVAGLXVAAT 307
            E+    +L+P + R    + H     + R+ +  ++ +P+W  G  GL VA T
Sbjct: 983  EDWAEKVLKPSIERLWHNVKHDSGRSIIRLTAVAAKALPRWGGGREGLPVAVT 1035


>09_06_0238 -
           21791139-21791264,21791862-21791948,21792713-21792766,
           21793199-21793261,21793363-21793410,21793626-21793688
          Length = 146

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 142 FGYNFGDYLKHWLSMPQPGRNMPKIFHVNWFRKDEQGN 255
           F  +F D+     + P P  ++ KI ++NWF+K+  GN
Sbjct: 3   FAASFSDHF----NSPSPTASV-KILNINWFQKEANGN 35


>03_01_0264 - 2043334-2043344,2043441-2043801,2044666-2044974
          Length = 226

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 385 FPYSEHRLSVCTPVESRRGRAPRXSDARSSLRPESSRPKP 266
           +P +  R   C    SRRG APR     ++ R + S P P
Sbjct: 21  YPATVARRCCCAVPRSRRGPAPRRRLGLAASRADDSSPAP 60


>08_02_1380 - 26547273-26547409,26548038-26548097,26549347-26549689
          Length = 179

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -2

Query: 498 HVGRRKSPCCGEESVTHLLQPKVFRYAEQLVHVDSA*VFRIQSTGSRY 355
           H     S CCG+ S T   +P+   Y  Q VH        +QS G R+
Sbjct: 49  HEEAPSSTCCGDMSATQQARPECLCYIIQQVHGGRN---EVQSLGLRF 93


>04_04_1527 - 34167673-34168245
          Length = 190

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 121 DRASPFYRCVRRRPWHRTSWKLXEHA 44
           + A+P YR VR+RPW R + ++ + A
Sbjct: 9   EAAAPRYRGVRKRPWGRFAAEIRDPA 34


>01_06_1668 +
           38998348-38998434,38999234-38999300,38999377-38999435,
           38999636-38999711,38999856-38999930,39000007-39000094,
           39000261-39000486,39000689-39000804,39001172-39001383,
           39001882-39001916,39002005-39002107,39002645-39002753,
           39002838-39003036
          Length = 483

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 151 NFGDYLKHWLSMPQP 195
           NFGD +KHW+++ +P
Sbjct: 164 NFGDRVKHWITINEP 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,314,594
Number of Sequences: 37544
Number of extensions: 369135
Number of successful extensions: 1127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)