Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0134
(634 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) 148 4e-36
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 145 3e-35
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 93 2e-19
SB_32195| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0) 29 3.1
SB_13697| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_26235| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_11| Best HMM Match : E6 (HMM E-Value=2.2) 27 9.6
>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 613
Score = 148 bits (358), Expect = 4e-36
Identities = 70/142 (49%), Positives = 96/142 (67%), Gaps = 7/142 (4%)
Frame = +1
Query: 64 MXSDAKAAAEHSGKMVMHDPFAMRPFFGYNFGDYLKHWLSMPQ-PGRNMPKIFHVNWFRK 240
+ S+ AAAE GK VM DPFAMRPFFGYNFG YL+HWL++ + P + +P IFHVNWFR
Sbjct: 446 LSSETTAAAEFKGKAVMRDPFAMRPFFGYNFGKYLEHWLNLSKDPKKKLPLIFHVNWFRL 505
Query: 241 DEQGNSSGPVSDENSRVLDWILRRCXXEPCHAETPLGYIPRAGALNTENL----SAVDMN 408
D+ + P ENSRVL+W+ RR E +P+G +P+ G+LN + L + N
Sbjct: 506 DKNEHFLWPGFGENSRVLEWVFRRVHGEEIADPSPVGLLPKYGSLNLDGLKDPVTPEAWN 565
Query: 409 ELFSIPKDFWLQEVS--YRFFT 468
E+FSIPKD+WL+E++ ++FT
Sbjct: 566 EMFSIPKDYWLEELTELRKYFT 587
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2
Query: 5 GVPLVVESXDWQHGVF 52
GVPLV++S +WQHGVF
Sbjct: 426 GVPLVMQSFNWQHGVF 441
>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 549
Score = 145 bits (351), Expect = 3e-35
Identities = 71/134 (52%), Positives = 87/134 (64%), Gaps = 5/134 (3%)
Frame = +1
Query: 64 MXSDAKAAAEHSGKMVMHDPFAMRPFFGYNFGDYLKHWLSMPQ-PGRNMPKIFHVNWFRK 240
+ S+ AAAE GK VM DPFAMRPFFGYNFG YL+HWLSM + P + +P IFHVNWFR
Sbjct: 325 LSSETTAAAEFKGKAVMRDPFAMRPFFGYNFGKYLEHWLSMEKDPKKKLPLIFHVNWFRL 384
Query: 241 DEQGNSSGPVSDENSRVLDWILRRCXXEPCHAETPLGYIPRAGALNTENL----SAVDMN 408
D + P ENSRVL+W+ R +P+G IP+ GALN E + + M
Sbjct: 385 DNTEHFLWPGFGENSRVLEWVFNRVHNVDNADVSPVGLIPKQGALNLEQMETPVTPEAMK 444
Query: 409 ELFSIPKDFWLQEV 450
ELFSIPK++WL EV
Sbjct: 445 ELFSIPKEYWLDEV 458
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2
Query: 5 GVPLVVESXDWQHGVF 52
GVPLV++S +WQHGVF
Sbjct: 305 GVPLVMQSFNWQHGVF 320
>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 707
Score = 92.7 bits (220), Expect = 2e-19
Identities = 41/72 (56%), Positives = 50/72 (69%), Gaps = 4/72 (5%)
Frame = +1
Query: 64 MXSDAKAAAEHSGKMVMHDPFAMRPFFGYNFGDYLKHWLSM----PQPGRNMPKIFHVNW 231
+ S+ AAAE GK +M DPFAMRPFFGYN+G YL+HWLSM P +P IFHVNW
Sbjct: 635 LSSETTAAAEFKGKAIMRDPFAMRPFFGYNYGRYLEHWLSMADKTKHPNYKLPDIFHVNW 694
Query: 232 FRKDEQGNSSGP 267
FR +E+G+ P
Sbjct: 695 FRVNEKGHFLWP 706
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 5 GVPLVVESXDWQHGVF 52
GVPLV ++ +WQHGVF
Sbjct: 615 GVPLVYKAFNWQHGVF 630
>SB_32195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 366 RCSEYGKPKRCRHERA 413
+CSEYG P+ C ERA
Sbjct: 196 QCSEYGNPRECEEERA 211
>SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)
Length = 680
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 337 ETPLGYIPRAGALNTENLSAVDMNELFSIPKD 432
E P G++P ALN L +D N+L +P D
Sbjct: 28 ELPRGFVPEVAALNITTLK-LDFNDLQRLPDD 58
>SB_13697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 220 HVNWFRKDEQGNSSGPVSDENSRVL 294
H +F DE G SGP D+N+ L
Sbjct: 4 HSKYFADDESGYDSGPQCDQNNHKL 28
>SB_26235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 406
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = +3
Query: 399 RH-ERAVQHT*RL---LAAGGELP--ILHHNKDSSVVRREAVLCCWVGKQ 530
RH R V H ++ L+AGGE+ ++HH + REAVL +GK+
Sbjct: 222 RHLRRRVSHLQKVGGRLSAGGEMDTLVIHHLRQKEKKEREAVLKKALGKE 271
>SB_11| Best HMM Match : E6 (HMM E-Value=2.2)
Length = 485
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 185 IDSQCFR*SPKL*PKNGRXANGSCITILP 99
+ SQC R + P G+ G C++ILP
Sbjct: 331 VPSQCLRAPSQKKPVEGKVEEGQCLSILP 359
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,480,237
Number of Sequences: 59808
Number of extensions: 395584
Number of successful extensions: 1059
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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