Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0130
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    28   1.6  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    27   2.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.7  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    27   3.7  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    27   3.7  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   6.5  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   8.6  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   8.6  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   8.6  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    25   8.6  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   8.6  

>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 238 IGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVYLTDYAAE-VSRVLEYVAQLV 71
           + AAIT    K  +  + F +E G  V    E+I   + DY AE  S++LE   QL+
Sbjct: 94  VNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQLVGDYVAENKSKILEQRYQLL 150


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 229 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYA 113
           AITIGD  + L  +   +++GP V +F  + +P +LT ++
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS 217


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 200 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRP 78
           PP  S+   S  S   +P + P +P  L    QP + V+ P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 6/126 (4%)
 Frame = +2

Query: 209 DIANSYCSSDVTDNDVSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEP--TDA 382
           D   S   S ++ +  S++ + +  S++TFS A+P             +S S+ P  + +
Sbjct: 168 DPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSS 227

Query: 383 ETLGTARTKLSRVPT*LTRRK--CRELKSSALTSVTRPEKLMMSM--HPEGSRSQRTVTA 550
            TL ++    S +P+  +        L SS+ +S         S+      S S  T T+
Sbjct: 228 STLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTS 287

Query: 551 ERISRS 568
             IS S
Sbjct: 288 STISSS 293


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = +1

Query: 283 LSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 375
           LSND L+   S +  P D     + ENAD+SFS  D
Sbjct: 160 LSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 221 SYCSSDVTDNDVSARETEAVASATTFSRAS 310
           SY  SD TD DVS  ++E   S+   SRAS
Sbjct: 58  SYRQSDDTDGDVSESQSEYRLSSGRRSRAS 87


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +2

Query: 347 MRISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSMHPEGS 526
           +R + + E TD E + T +T LS     + +      +S   +S TRP  + +  HP+G 
Sbjct: 474 LRKASTLETTDQEQIDTWKTTLSEKLESIWKALYIN-ESLEASSKTRPPFISIISHPKGM 532

Query: 527 R 529
           R
Sbjct: 533 R 533


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 265 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 369
           G GSG L ND L+ K S    P     +NA  S  G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 551 ERISRSQQFTDFIEQV*DHDVKDA 622
           E +SR QQF D +  +   ++KDA
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDA 86


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 187  LFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLVIN 65
            +  R++GP V  F+ K+P  L +   ++  + + V +LV+N
Sbjct: 972  IHNRKMGPTVKKFISKLP--LLNINVDLLPLTKNVLRLVLN 1010


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
 Frame = +2

Query: 230 SSDVTDNDVSARETEAVASATTFSRASPPEAKDLRTRL-KMRISPSAEPTDAETLGTART 406
           S+  TD D S R++ A    T  +     E KD+ + + K + S  +  +  E      T
Sbjct: 46  SAGATDEDDSERKSSAKDLTTPVTEGEVDELKDMFSSMKKKKKSKKSSASAEEQTEDITT 105

Query: 407 KLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSMHPEGSRSQRTVTAERI 559
           +   +     ++K ++ KS+ L++  +  +   +       S++T  +E +
Sbjct: 106 ESGELDFSSMKKKKKKKKSADLSAFEKELEASSTGDATSDLSKQTFDSENM 156


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 461 SSALTSVTRPEKLMMSMHPEGSRSQRTVTAERISRSQQF 577
           S  +  +  PE  + S+HP  SR +  ++   ++R  QF
Sbjct: 189 SLEIAPLISPESQLSSLHPSSSR-RHLISTPHVNRGTQF 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,889
Number of Sequences: 5004
Number of extensions: 49480
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)