Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0130
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0182 + 20997071-20997832,20998010-20998150                       28   6.8  
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675...    28   6.8  
05_03_0478 - 14526180-14526578                                         28   6.8  
03_05_0514 - 25082662-25082669,25082978-25083043,25083903-250840...    28   6.8  
11_01_0154 + 1281434-1281725,1281923-1281987,1282112-1282175,128...    28   9.0  
02_05_0377 + 28408751-28409113,28409545-28410129,28411212-28411385     28   9.0  
01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728     28   9.0  

>11_06_0182 + 20997071-20997832,20998010-20998150
          Length = 300

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -2

Query: 268 LPXRHIIVSDIGAAITIGDVKSNLQI--NLFGREVG-PAVNNFLEKIPVYLTDYAA 110
           LP RHIIVS  G  +   D +S L +   + G ++  P+V    +  P+Y  D AA
Sbjct: 31  LPNRHIIVSCYGWIVN-ADERSELHLVNPITGEQIALPSVTTIEQVKPIYDDDAAA 85


>05_04_0307 +
           20066169-20066410,20066803-20066858,20067490-20067581,
           20068400-20068502,20068623-20068760,20068898-20069148
          Length = 293

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 652 RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 557
           RDV+  PN + + D+   N  +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249


>05_03_0478 - 14526180-14526578
          Length = 132

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = -1

Query: 173 SWTSRQQLPREDPCLPDGLRS---RGQPCSGVRRPTRH 69
           SW  RQ+   ED    DG R    RGQ     RRP RH
Sbjct: 54  SWARRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRRH 91


>03_05_0514 -
           25082662-25082669,25082978-25083043,25083903-25084017,
           25084769-25084843,25085285-25085338,25085420-25085471,
           25087308-25087447,25087993-25088077,25088358-25088431,
           25088533-25088616,25088617-25088653,25089569-25089872,
           25090371-25090536,25091053-25091076
          Length = 427

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +2

Query: 362 SAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSMHPEGS--RSQ 535
           + +  D    G ART  S       R     L +S L S T  + L  S HP  +  R+ 
Sbjct: 256 NTQEQDPRFPGRARTLSSAGTEPTAREASANLHASLLDSTTPSDPLTSSQHPAANTVRAD 315

Query: 536 RTVTAERI 559
            TV A+++
Sbjct: 316 ATVAADQV 323


>11_01_0154 +
           1281434-1281725,1281923-1281987,1282112-1282175,
           1282303-1282449,1282583-1282677,1284358-1284465
          Length = 256

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -3

Query: 552 SAVTVRWLLEPSGCIDIINFSGRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSAS 376
           SA + RW+LEP+G  D  +   RV        +S     V  V  + ++VL+V  VS +
Sbjct: 86  SATSERWVLEPAGDGDWRHIGYRVARPGGFQIASEAAVTVGRVPEQADIVLSVATVSGT 144


>02_05_0377 + 28408751-28409113,28409545-28410129,28411212-28411385
          Length = 373

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +2

Query: 206 FDIANSYCSSDVTDNDVSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAE 385
           FD A ++C +D+     +  E EA +SA   +  + P  K  R R K     S E T+ +
Sbjct: 32  FDNAAAFCDADIL-GATATGEKEATSSAAAAAAEAAPPRKKRRRRAKS--CKSREETETQ 88

Query: 386 TL 391
            +
Sbjct: 89  RM 90


>01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728
          Length = 316

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 446 CRELKSSALTSVTRPEKLMMSMHPEGSRSQRTVTAE 553
           C   KSS  ++  +PE +    HPE + ++ + +AE
Sbjct: 165 CHASKSSPRSTAPKPEPVADGQHPEPAENESSASAE 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,643,679
Number of Sequences: 37544
Number of extensions: 362276
Number of successful extensions: 1173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)