Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0129
         (403 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2E4W6 Cluster: Beige/BEACH domain containing protein; ...    31   6.4  
UniRef50_Q18XZ8 Cluster: Inner-membrane translocator; n=6; Bacte...    31   8.5  

>UniRef50_A2E4W6 Cluster: Beige/BEACH domain containing protein; n=1;
            Trichomonas vaginalis G3|Rep: Beige/BEACH domain
            containing protein - Trichomonas vaginalis G3
          Length = 2475

 Score = 31.5 bits (68), Expect = 6.4
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = -3

Query: 368  YPVNYYYV*DKVRHSIDLALITKILFYITYKLTLYSGFLFLL-NCK*LRQ*YYLXXXXXX 192
            +P +Y+Y  DK+R+  +      + F++    TL S  LFL+ +        YL      
Sbjct: 798  FPASYFYTGDKLRYQHNFKNGFGMTFWLKLS-TLMSSDLFLIGDISITTSNGYLMIKNTK 856

Query: 191  XFMLANISPWLLIYI*LVTHKNITYVNVKFFVDEY 87
               + N+  W  I I L+  K   Y+  + ++ ++
Sbjct: 857  IDYIINVDEWTFISINLIDTKLSVYIEKEQYIFDF 891


>UniRef50_Q18XZ8 Cluster: Inner-membrane translocator; n=6;
           Bacteria|Rep: Inner-membrane translocator -
           Desulfitobacterium hafniense (strain DCB-2)
          Length = 321

 Score = 31.1 bits (67), Expect = 8.5
 Identities = 19/40 (47%), Positives = 25/40 (62%)
 Frame = -3

Query: 362 VNYYYV*DKVRHSIDLALITKILFYITYKLTLYSGFLFLL 243
           VN+Y    KV    DL +I K+ F  TY +T+Y GFLFL+
Sbjct: 128 VNFYL--RKVPFLGDLPVIGKLFFQNTY-ITVYIGFLFLI 164


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 329,255,848
Number of Sequences: 1657284
Number of extensions: 5382182
Number of successful extensions: 9264
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9260
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17349842203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)