Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0129
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0305 + 17527906-17528148,17528986-17529051,17529624-17530808     27   7.3  
05_06_0172 + 26138238-26138474,26138712-26139854                       26   9.7  
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830...    26   9.7  
03_04_0065 + 16984736-16984835,16984932-16985369,16985511-169856...    26   9.7  

>02_03_0305 + 17527906-17528148,17528986-17529051,17529624-17530808
          Length = 497

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 56  YTDGAVHIEKNIHQQKTLHLH 118
           +  G  H+ KNIH++K +H H
Sbjct: 120 FIKGQKHLLKNIHRRKPIHSH 140


>05_06_0172 + 26138238-26138474,26138712-26139854
          Length = 459

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 65  GAVHIEKNIHQQKTLHLH 118
           G  H+ KNIH++K +H H
Sbjct: 99  GHTHLLKNIHRRKPVHSH 116


>04_03_0694 +
           18781776-18781994,18782475-18782648,18782743-18783057,
           18783791-18785569,18786334-18786651,18787052-18787105
          Length = 952

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 113 NVKFFVDEYSFLYELLHLCKAFIICY 36
           N   F D   FLYE L L K  I CY
Sbjct: 699 NANAFKDGLLFLYEKLKLFKEVISCY 724


>03_04_0065 +
           16984736-16984835,16984932-16985369,16985511-16985635,
           16985747-16985881,16985954-16986012,16986082-16986843,
           16986973-16987118,16987151-16987251
          Length = 621

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 182 LANISPWLLIYI*LVTHKNITYVNVKFFVDEYSFLYEL 69
           L +++P  + ++ +  H    Y+ V+ F+D + F YEL
Sbjct: 42  LLHLNPSSIAFLSVFVHLCEAYIGVEPFLDLFRFYYEL 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,987,561
Number of Sequences: 37544
Number of extensions: 120253
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)