Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0128
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...    57   2e-09
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...    48   1e-06
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    34   0.019
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   2.2  
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.0  

>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 28/31 (90%), Positives = 29/31 (93%)
 Frame = +1

Query: 1   AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 93
           AQQPRLFV MILILIFAEVLGLYGLIVA+ L
Sbjct: 121 AQQPRLFVAMILILIFAEVLGLYGLIVALLL 151


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +1

Query: 4   QQPRLFVGMILILIFAEVLGLYGLIVAIYL 93
           +Q R+FV M+LILIFAEVLGLYGLIV + L
Sbjct: 124 RQDRIFVSMVLILIFAEVLGLYGLIVGLIL 153


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +1

Query: 1   AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 93
           AQ   LFV ++++ IF  VLGL+GLIV + +
Sbjct: 161 AQDASLFVKVLVVEIFGSVLGLFGLIVGLLI 191



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 10  PRLFVGMILILIFAEVLGLYGLIVAI 87
           PR+    ++ +IF EV+ +Y LI+AI
Sbjct: 80  PRIKTKNLISIIFCEVVAIYSLIIAI 105


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 491 AISIDIQFYLRVTSSATSEDINLDYFSNKAK 583
           A+S+  Q Y+RV S+    +INL YF + AK
Sbjct: 498 AVSLQPQ-YVRVRSNMAVSNINLGYFEDAAK 527


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -2

Query: 99  CVQVDGDD-KSV--KTQYFSENKNKNHSDE*P 13
           C++VD +D K +  K+QY +EN N N  +  P
Sbjct: 233 CIEVDSEDWKDLVWKSQYATENANTNSINNSP 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,163
Number of Sequences: 5004
Number of extensions: 64226
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)