Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0128
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0267 + 42410174-42410252,42410679-42411097 56 3e-08
12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006 54 2e-07
11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538 54 2e-07
05_01_0043 - 295041-295173,296252-296537,296616-296697 54 2e-07
02_04_0181 - 20705307-20705439,20705991-20706037,20706181-207062... 54 2e-07
01_05_0664 + 24122958-24123070,24123184-24123261,24125040-241252... 33 0.33
09_06_0223 + 21659549-21659729,21659888-21659979 29 5.4
07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520 29 5.4
05_03_0591 + 15892772-15893412,15893478-15893910 28 7.1
01_05_0016 + 17177812-17178084,17178358-17178480,17178526-171788... 28 7.1
12_02_0971 + 24949137-24950534 28 9.4
04_04_0289 + 24167246-24167411,24167584-24167708,24167744-241686... 28 9.4
>01_07_0267 + 42410174-42410252,42410679-42411097
Length = 165
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 1 AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 93
AQQP+LFVGMILILIFAE LGLYGLIV I L
Sbjct: 125 AQQPKLFVGMILILIFAEALGLYGLIVGIIL 155
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 7 QPRLFVGMILILIFAEVLGLYGLIVAIYL 93
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVII 76
>12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006
Length = 165
Score = 53.6 bits (123), Expect = 2e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 1 AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 93
AQQP+LFVGMILILIFAE L LYGLIV I L
Sbjct: 125 AQQPKLFVGMILILIFAEALALYGLIVGIIL 155
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 7 QPRLFVGMILILIFAEVLGLYGLIVAIYL 93
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVII 76
>11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538
Length = 165
Score = 53.6 bits (123), Expect = 2e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 1 AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 93
AQQP+LFVGMILILIFAE L LYGLIV I L
Sbjct: 125 AQQPKLFVGMILILIFAEALALYGLIVGIIL 155
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 7 QPRLFVGMILILIFAEVLGLYGLIVAIYL 93
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVII 76
>05_01_0043 - 295041-295173,296252-296537,296616-296697
Length = 166
Score = 53.6 bits (123), Expect = 2e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 1 AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 93
AQQP+LFVGMILILIFAE L LYGLIV I L
Sbjct: 126 AQQPKLFVGMILILIFAEALALYGLIVGIIL 156
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 7 QPRLFVGMILILIFAEVLGLYGLIVAIYL 93
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 49 RPELVMKSIVPVVMAGVLGIYGLIIAVII 77
>02_04_0181 -
20705307-20705439,20705991-20706037,20706181-20706229,
20706685-20707055
Length = 199
Score = 53.6 bits (123), Expect = 2e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 1 AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 93
AQQP+LFVGMILILIFAE L LYGLIV I L
Sbjct: 159 AQQPKLFVGMILILIFAEALALYGLIVGIIL 189
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 7 QPRLFVGMILILIFAEVLGLYGLIVAIYL 93
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 50 RPELVMKSIVPVVMAGVLGIYGLIIAVII 78
>01_05_0664 +
24122958-24123070,24123184-24123261,24125040-24125210,
24125288-24125456
Length = 176
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 1 AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 93
AQ LFV +++I IF LGL+G+IV I +
Sbjct: 136 AQNSSLFVKILVIEIFGSALGLFGVIVGIIM 166
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 10 PRLFVGMILILIFAEVLGLYGLIVAIYL 93
PR+ ++ +IF E + +YG+IVAI L
Sbjct: 55 PRITSKNLISVIFCEAVAIYGVIVAIIL 82
>09_06_0223 + 21659549-21659729,21659888-21659979
Length = 90
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 202 YRRRPSLCASSDSDNEHRGSEHGRRE 125
++RR S DNE +G +HGRRE
Sbjct: 35 WQRRKRDTNGSGKDNEGKGGQHGRRE 60
>07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520
Length = 568
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = -2
Query: 183 CARLQTQIMSIEA--RSTGDGSGVCSGR 106
C+R++TQ+ ++A R+TG G G +GR
Sbjct: 529 CSRMKTQMSKMKAARRATGGGGGAAAGR 556
>05_03_0591 + 15892772-15893412,15893478-15893910
Length = 357
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 121 CVFRAFILCTGRWRR*VRKDPILQRK 44
C RA ++C RWRR + DP QR+
Sbjct: 28 CAVRASLVCK-RWRRLLTDDPCFQRR 52
>01_05_0016 +
17177812-17178084,17178358-17178480,17178526-17178862,
17178896-17179039,17179555-17180219
Length = 513
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 721 IAHILSSQFTLTPQETGTLY 662
IA ++ QF L P+ETG+LY
Sbjct: 18 IADVMREQFELKPKETGSLY 37
>12_02_0971 + 24949137-24950534
Length = 465
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Frame = -1
Query: 337 DSRL*MRSSRSNKAAPVWRYVKT---SREQINIQEWKGAPKPYARWTRYRRRPS 185
D R + S + + VWR T + + WK P P WT Y P+
Sbjct: 405 DKRWVVYSGSLDGSVKVWRVSSTPDAAAARTPAHGWKATPSPLGAWTPYAATPA 458
>04_04_0289 +
24167246-24167411,24167584-24167708,24167744-24168694,
24168788-24168940,24169251-24169475,24170102-24170587
Length = 701
Score = 27.9 bits (59), Expect = 9.4
Identities = 25/80 (31%), Positives = 37/80 (46%)
Frame = -2
Query: 348 KNIQIHVSRCGAAAATRLHRSGDM*KRAGNKLIYKSGRVLRNPMQGGPATGDDHPCARLQ 169
++I +H RC A R + AG L+ S + R P QGG G+DH +++
Sbjct: 530 EDILLHDDRCEATREATT-RPPPLLAAAG--LLASSAQADRGPAQGGD--GNDH---QIR 581
Query: 168 TQIMSIEARSTGDGSGVCSG 109
T + + GDG G SG
Sbjct: 582 TAPIESCGAAAGDGDGDGSG 601
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,158,690
Number of Sequences: 37544
Number of extensions: 438658
Number of successful extensions: 1174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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