Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0128
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   3e-09
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042)                  29   3.1  
SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_47374| Best HMM Match : RAMP (HMM E-Value=7.4)                      28   7.2  
SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = +1

Query: 1   AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 93
           AQQPRLFVGMILILIFAEVLGLYGLIVA+ L
Sbjct: 121 AQQPRLFVGMILILIFAEVLGLYGLIVALIL 151


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 130  REWCVF---RAFILCTGRWRR*VRKDPILQRK*E*ESFRRI 17
            R WCV+   R+ I CT RW R V   P  + +   +S RR+
Sbjct: 931  RGWCVYHMGRSLIACTRRWMRKVACSPSKETRPHRQSSRRL 971


>SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042)
          Length = 440

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 277 VKTSREQINIQEWKGAPKPYARWTRYRR 194
           VK  + Q ++  WK  P  Y +W RY R
Sbjct: 169 VKLEQAQNDLSAWKFTPDRYVQWDRYSR 196


>SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 162 IMSIEARSTGDGSGVCSGRLFCVQVDGDDKSVKTQYFSENKNKN 31
           + ++  +STGD S VC G +F    D   K +  Q   E K  N
Sbjct: 15  LSALNKKSTGDKSWVCFGNMFMKLPDSKTKDMIIQGLQEVKGFN 58


>SB_47374| Best HMM Match : RAMP (HMM E-Value=7.4)
          Length = 158

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = -1

Query: 316 SSRSNKAAPVWRYVKTSREQINIQEWKGAPKPYARWTRYRRRPSLCASSDSDN 158
           S+  ++ AP W Y KTS +        GAP P   WT  R  PSL    D  N
Sbjct: 89  STWRSRLAP-W-YSKTSSDH---SPTTGAPLPMKTWTNSRCLPSLTDRKDEQN 136


>SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 277 HISRPVQPCCCGC 315
           H+  PV PCCC C
Sbjct: 77  HVELPVSPCCCLC 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,365,900
Number of Sequences: 59808
Number of extensions: 493987
Number of successful extensions: 1095
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)