Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0128
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    66   3e-13
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   5.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.5  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   9.5  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   9.5  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 66.5 bits (155), Expect = 3e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   AQQPRLFVGMILILIFAEVLGLYGLIVAIYLY 96
           AQQPRLFVGMILILIFAEVLGLYGLIVAIYLY
Sbjct: 123 AQQPRLFVGMILILIFAEVLGLYGLIVAIYLY 154


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 16  LFVGMI-LILIFAEVLGLYGLIVAIY 90
           L VG + LILIF  V G   + VAIY
Sbjct: 26  LLVGFLFLILIFLSVAGNILVCVAIY 51


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 240 HSCILICSLLVFTYLQTGAA 299
           H C++ C + V TYL++  A
Sbjct: 341 HPCVMDCKVGVRTYLESELA 360


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 240 HSCILICSLLVFTYLQTGAA 299
           H C++ C + V TYL++  A
Sbjct: 256 HPCVMDCKVGVRTYLESELA 275


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 240 HSCILICSLLVFTYLQTGAA 299
           H C++ C + V TYL++  A
Sbjct: 575 HPCVMDCKVGVRTYLESELA 594



 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 99  CVQVDGDDKSVKTQYFSENKNKNHSD 22
           C+  D   +S+ TQ+    +++ HSD
Sbjct: 328 CLDCDEIRESLDTQFLQVCRSRRHSD 353


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 482 CSLLSPKIKHMCNKLIKY 429
           C+  + K KH  NK++ Y
Sbjct: 72  CNKCNEKQKHTANKVVNY 89


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 482 CSLLSPKIKHMCNKLIKY 429
           C+  + K KH  NK++ Y
Sbjct: 72  CNKCNEKQKHTANKVVNY 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,676
Number of Sequences: 438
Number of extensions: 4375
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)