Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0127
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    26   0.34 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    26   0.34 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   2.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.4  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    23   2.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   5.5  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   9.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.6  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 431 PGCR-VSTCSHSRAYELYASTVRHN 502
           PGC  V +CS+ +  E +A  +RHN
Sbjct: 376 PGCHMVDSCSNIQTGEQFARLLRHN 400


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 431 PGCR-VSTCSHSRAYELYASTVRHN 502
           PGC  V +CS+ +  E +A  +RHN
Sbjct: 383 PGCHMVDSCSNIQTGEQFARLLRHN 407


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 65  VHNNNVAVGDGQQGG 21
           V+NN +  GDG  GG
Sbjct: 505 VYNNKIPTGDGALGG 519


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -1

Query: 337 ISSCVTVQGLVVTTPPGPSRIQTGNPVGLPPACRPALPTTCAPKLKPIKWTRPQLPPP 164
           ISS   + GL   T PG   + + +     P+   A P      L P +    +LPPP
Sbjct: 681 ISSPGALSGLSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPP 738


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -1

Query: 337 ISSCVTVQGLVVTTPPGPSRIQTGNPVGLPPACRPALPTTCAPKLKPIKWTRPQLPPP 164
           ISS   + GL   T PG   + + +     P+   A P      L P +    +LPPP
Sbjct: 573 ISSPGALSGLSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPP 630


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -3

Query: 509 RNDCDEQWRRTIRRLDCESRY*LCNPVGGFCHRWGKSHHE 390
           R D    ++  ++  + E R    N V  FC    K+H E
Sbjct: 282 RTDLVPAFQNLLKDTEAEVRAAAANKVKDFCQNLDKAHQE 321


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -3

Query: 251 ATSLSSSVTDNVRAQAEANQVD--STPIAASVVDEPDQKVAKELSDTGNSIDGSVV 90
           ++S+S   +  V +     +++    P+ ++    PD++     SD     DG VV
Sbjct: 810 SSSISERCSSRVESLTPERKMEPPGVPLNSTPRSTPDKREKSPTSDKAQEADGEVV 865


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 219 VVGNAGRQAGGRPTGLPVWIR 281
           VVG+AGR + G+   +  W R
Sbjct: 4   VVGDAGRASKGQDKHMVHWFR 24


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 590 LVSAETESTDSELAAVGLSKNTISVNQIKQNST 688
           LVS   +S +S+ +A       + VN+ K+N T
Sbjct: 213 LVSEHPDSPNSKKSATPSPPPQLEVNERKENLT 245


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 431 PGCRVSTCSHSRAYELYASTVRHNRFLADYVTTSIRLRTI 550
           P  +V   SH+  YEL   T R+ + L    T+  R+  I
Sbjct: 272 PHLQVLDLSHNSLYELDFDTFRNTKKLQWLDTSHNRISEI 311


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,445
Number of Sequences: 336
Number of extensions: 5010
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)