Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0127
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    28   0.097
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.69 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   0.91 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.1  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   4.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   4.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   4.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.9 bits (59), Expect = 0.097
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 124 PTLGTPLTAVLYRPLARPRQST 59
           P +GTP T ++Y+P   P Q++
Sbjct: 847 PVIGTPSTGMMYKPFLIPEQTS 868


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 580 NAVFGKRGNGIYGLRTGSSWPF*KYDIC 663
           N V  K+G G   LR    W F KY+ C
Sbjct: 97  NVVTNKKGKGGPLLRPYPDWSFAKYEDC 124


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 580 NAVFGKRGNGIYGLRTGSSWPF*KYDIC 663
           N V  K GNG   L+    W F KY+ C
Sbjct: 96  NVVSDKTGNGGRLLQPYPDWSFAKYEDC 123


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 74   TTPVHNNNVAVGDGQQGGAD 15
            + P +N +   GDG++GGA+
Sbjct: 1052 SNPSYNFSSVSGDGEEGGAE 1071


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 74   TTPVHNNNVAVGDGQQGGAD 15
            + P +N +   GDG++GGA+
Sbjct: 1048 SNPSYNFSSVSGDGEEGGAE 1067


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 580 NAVFGKRGNGIYGLRTGSSWPF*KYDIC 663
           N +  K G+G   L+    W F KYD C
Sbjct: 91  NVISKKVGDGGPLLQPYPDWSFAKYDDC 118


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 465 RL*EQVLTLQPGWGFLPPLG*KSP 394
           R+    + LQPG  F  PLG + P
Sbjct: 458 RMDRDAVYLQPGMSFGEPLGLRRP 481


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 580 NAVFGKRGNGIYGLRTGSSWPF*KYDIC 663
           N +  K G+G   L+    W F KYD C
Sbjct: 91  NVISKKVGDGGPLLQPYPDWSFAKYDDC 118


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 580 NAVFGKRGNGIYGLRTGSSWPF*KYDIC 663
           N +  K G+G   L+    W F KYD C
Sbjct: 91  NVISKKVGDGGPLLQPYPDWSFAKYDDC 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,684
Number of Sequences: 438
Number of extensions: 5620
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)