Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0125
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0126 + 31865339-31867943,31868176-31868660                       28   3.7  
11_01_0460 + 3561490-3564104,3564162-3564558                           28   4.9  
07_03_1176 + 24567720-24570932                                         28   4.9  
07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782...    28   4.9  
05_06_0263 + 26752759-26754393                                         28   4.9  
02_02_0191 + 7642942-7642944,7643405-7643513,7643578-7643886,764...    27   6.5  
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846...    27   8.6  

>03_06_0126 + 31865339-31867943,31868176-31868660
          Length = 1029

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 256 ELELSIGEINSEIQLNLFGREVGGRISDFLNKLPYNLEKYQ 378
           E+  S  E+ +   LNLF  ++ G I DF+  LP +LE  Q
Sbjct: 303 EIPASFSELKNLTLLNLFRNKLRGDIPDFVGDLP-SLEVLQ 342


>11_01_0460 + 3561490-3564104,3564162-3564558
          Length = 1003

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 8   SNAAGFSTF-ELDSISYNLFTGQLHLSLSLNSVAASIDAAEGEVQ 139
           S A G  TF +  S+S N FTG++HLSL       ++D +   +Q
Sbjct: 70  SPALGNMTFLKFLSLSTNSFTGEIHLSLGHLHRLETLDLSNNTLQ 114


>07_03_1176 + 24567720-24570932
          Length = 1070

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 268 SIGEINSEIQLNLFGREVGGRISDFLNKLPYNLEK 372
           SIG++N  I L+L    +GG I   +  LP NLE+
Sbjct: 544 SIGQLNYLISLDLSRNHLGGEIPTSVKNLP-NLER 577


>07_01_0929 +
           7818973-7820019,7820092-7820328,7820455-7820541,
           7820785-7820919
          Length = 501

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 250 PDGVSVNTDSDNSTSANAHVGHGDSSRSVCGQFTVENL 137
           P+  +   D+  S   N   GHGDSS ++   F+V ++
Sbjct: 452 PETEAAGDDAKESEGKNNPHGHGDSSEAISVMFSVPSM 489


>05_06_0263 + 26752759-26754393
          Length = 544

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 289 EIQLNLFGREVGGRISDFLNKLPYNLEKYQSQVS 390
           +++ NLFG E G  +S  L+KLP  +E Y S ++
Sbjct: 333 DLRDNLFGVEAGLALSKTLSKLPDLVELYLSDLN 366


>02_02_0191 +
           7642942-7642944,7643405-7643513,7643578-7643886,
           7644697-7644839
          Length = 187

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 357 LQLRKIPIPGQPGF 398
           L L K+P+PG+PGF
Sbjct: 112 LGLEKVPVPGEPGF 125


>04_02_0007 +
           8464923-8465155,8466037-8466591,8466645-8467662,
           8467768-8468485,8468651-8468937
          Length = 936

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 271 IGEINSEIQLNLFGREVGGRISDFLNKLP 357
           IG + S  Q+NL    + G I D L KLP
Sbjct: 156 IGNLTSLSQINLTDNHLSGAIPDELGKLP 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,987,614
Number of Sequences: 37544
Number of extensions: 177882
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)