Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0125
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 247  DGVSVNTDSD 218
            DGVS+N DSD
Sbjct: 977  DGVSLNLDSD 986


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 392 GFWSTSPNTSSTDFCPDLLMRNNT 463
           G WS  PN    D   DL+  N +
Sbjct: 672 GSWSNRPNLLFKDEAKDLVSVNKS 695


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 392 GFWSTSPNTSSTDFCPDLLMRNNT 463
           G WS  PN    D   DL+  N +
Sbjct: 672 GSWSNRPNLLFKDEAKDLVSVNKS 695


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 392 GFWSTSPNTSSTDFCPDLLMRNNT 463
           G WS  PN    D   DL+  N +
Sbjct: 672 GSWSNRPNLLFKDEAKDLVSVNKS 695


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,551
Number of Sequences: 438
Number of extensions: 1744
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)