Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0124
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   2.9  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   2.9  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   6.8  
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    25   9.0  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    25   9.0  

>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 325 GRISDFLNKLPYNLEKYQSQVSRVLEYVSEY 417
           G +    ++ P  L K   Q+S  LEY SEY
Sbjct: 148 GDVETIASQSPLELSKLVEQISGSLEYKSEY 178


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 244 GVSVNTDSDNSTSANAHVGHGDSSRSVCG 158
           G  V     NS+  N H  HG   R+VCG
Sbjct: 539 GTLVPPTKQNSSPKNGHGIHGSFLRTVCG 567


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 2   GTSNAAGFSTFELDSI 49
           GT N A  STF LDS+
Sbjct: 807 GTGNVASLSTFALDSV 822


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
 Frame = +2

Query: 2   GTSNAAGFSTFELDSISYNL---------FTGQLHLSLSLNSVAASIDAAEGEVQIFDRK 154
           G  +  G+ +F  DSISY+L         F G+L +   +N        A+  V++ D K
Sbjct: 70  GLKDKQGYLSFWNDSISYSLRGCILMELAFRGKLRMQKDVN--RKRFPLADRVVELVDEK 127

Query: 155 LTAD 166
           LT +
Sbjct: 128 LTGE 131


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 229 TDSDNSTSANAHVGHGDSSRSVCGQ 155
           +DSD   S + H  HG  + + C Q
Sbjct: 368 SDSDEEDSDSKHTAHGQQNAAECRQ 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,753,306
Number of Sequences: 5004
Number of extensions: 29038
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)