Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0124
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31266| Best HMM Match : PKI (HMM E-Value=1)                         29   3.0  
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_55306| Best HMM Match : DUF361 (HMM E-Value=3)                      28   5.3  
SB_55538| Best HMM Match : zf-BED (HMM E-Value=1.4)                    27   7.0  
SB_26764| Best HMM Match : ANF_receptor (HMM E-Value=0.001)            27   9.3  

>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
          Length = 1507

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 23  FSTFELDSISYNLFTGQ--LHLSLSLNSVAASIDAAEGEVQIFDRKLTAD 166
           FS  +L   SY+L TG+  LHLS   + V  S   + G +QI   KL  D
Sbjct: 304 FSKHDLLETSYHLRTGRIDLHLSDDSSEVTPSDPLSGGAMQIRINKLATD 353


>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 265  LSIGEINSEIQLNLFGREVGG 327
            LSI   N +I+L+L GR+VGG
Sbjct: 1101 LSINPTNGQIELSLKGRDVGG 1121


>SB_55306| Best HMM Match : DUF361 (HMM E-Value=3)
          Length = 151

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +1

Query: 289 EIQLNLFGREVGGRISDFLNKLPYNLEKYQSQVSRVLEYV 408
           ++++NL  + +GGRI+  +++L + +    S+  RVL+ +
Sbjct: 85  KLEINLSKKLIGGRINKKIDELNWKISNASSKTLRVLKKI 124


>SB_55538| Best HMM Match : zf-BED (HMM E-Value=1.4)
          Length = 1108

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 47  ISYNLFTGQLHLSLSLNSVAASIDAAEG 130
           + Y  F+G LH +L +    AS+DA +G
Sbjct: 721 VQYMQFSGSLHANLYMEVEVASVDAFQG 748


>SB_26764| Best HMM Match : ANF_receptor (HMM E-Value=0.001)
          Length = 342

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 398 WSTSPNTSSTDFCPDLLMRN-NTCFIYKHSLQF 493
           W++ P +S  DFC ++L +N +   I K S +F
Sbjct: 72  WNSDPKSSLVDFCEEVLSQNISAILITKMSDKF 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,726,974
Number of Sequences: 59808
Number of extensions: 209992
Number of successful extensions: 608
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)