Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0124
         (519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25360.1 68417.m03649 expressed protein                             34   0.066
At3g17950.1 68416.m02285 expressed protein ; expression supporte...    28   4.3  
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ...    27   5.7  
At4g31570.1 68417.m04483 expressed protein                             27   5.7  
At4g16835.1 68417.m02541 pentatricopeptide (PPR) repeat-containi...    27   5.7  

>At4g25360.1 68417.m03649 expressed protein
          Length = 533

 Score = 33.9 bits (74), Expect = 0.066
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +2

Query: 71  QLHLSLSLNSVAASIDAAEGEVQIFDRKLTADASGGIAV 187
           Q+H+ LSL++   +I     ++  FD+ LT+D+S G+ V
Sbjct: 63  QVHVPLSLSNHTVNILQKSSDINAFDKNLTSDSSSGLPV 101


>At3g17950.1 68416.m02285 expressed protein ; expression supported
           by MPSS
          Length = 211

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 226 DSDNSTSANAHVGHGDSSRSVCGQFTVENLDFSFSSVY 113
           D D++     H G GDS RS  G++      F   +VY
Sbjct: 105 DDDDAAGNGIHRGTGDSKRSSLGEYLEVERRFGDEAVY 142


>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 519

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 259 VRVPDGVSVNTDSDNSTSANAHVGHGDSSRSVCGQ 155
           + +P  +++N   D+  S   H+GHGD    VC Q
Sbjct: 171 INLPRVININRH-DHKISRTYHLGHGDWECGVCRQ 204


>At4g31570.1 68417.m04483 expressed protein
          Length = 2712

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 298  LNLFGREVGGRISDFLNKLPYNLEKYQSQVSRVLEYVSEYI 420
            +NL     GG I++    L  NL+++   VS + E VS+++
Sbjct: 2131 INLHETSSGGNIAEICGSLSQNLDQFVVGVSHLEEKVSKHL 2171


>At4g16835.1 68417.m02541 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 575

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = +3

Query: 324 RTHQRLLEQAPLQLRKIPIPGQPGFGVRLRIHHQQTS 434
           R  +R+ E   +++ ++ +PG     +R ++HH ++S
Sbjct: 422 RVRKRMKESNVVKVERVKVPGYSWIEIRNKVHHFRSS 458


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,025,427
Number of Sequences: 28952
Number of extensions: 148259
Number of successful extensions: 515
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)