Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0123
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    31   0.20 
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   3.2  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    27   3.2  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   4.2  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   5.6  

>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 441 RVFLLICSDGELPFKAAVYLTATPQARTHCDQ-QRKLQGTVQ 563
           RVF+++  +GE P     + T TP AR +CD    +L+  +Q
Sbjct: 3   RVFIVV-KEGEDPTSLVFHFTGTPNARENCDMITNELRNAIQ 43


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -2

Query: 380  WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFHRAHCDGKIQRN--ATVCRIV 231
            W +LLV  +  C NS   +R+G  Q   +IF+ + C  K+  N  A+ C++V
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN-SQC-SKLGTNAWASCCQLV 1073


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 694 FGKSNANDIYPVVLTSISSFTEWSTKRSL 780
           FG S AN + PV L S  SFT +  K  +
Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKSDI 271


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 676 AHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 569
           +H+  +  H S+Y R+R   PG N      QS   H
Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 466  MGNYRSRRQCI*RQLHKLELIVTNKENCREQYKGHDRVV 582
            + N+R  ++ +  QL   +  V   EN  E+YK H++ +
Sbjct: 1267 LANFRLNKEQLESQLQTEKAAVKKLENSNEEYKRHNQEI 1305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,505,753
Number of Sequences: 5004
Number of extensions: 78853
Number of successful extensions: 238
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)